Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_J21
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 30 1.1
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 30 1.1
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 29 1.5
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 29 2.0
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 29 2.0
06_03_0260 - 18857970-18858737,18858909-18859145 28 3.4
06_01_1013 - 7931756-7935109 28 3.4
04_04_0998 - 29996117-29996242,29996345-29996486,29996613-299968... 28 3.4
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482... 28 4.5
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 27 6.0
04_03_0852 + 20289439-20289721,20289858-20290642 27 6.0
01_07_0241 + 42231224-42232615 27 6.0
01_06_0194 - 27368563-27370956 27 6.0
06_01_1188 + 10219546-10219664,10220855-10223660 27 7.9
04_04_0881 + 29055724-29059197 27 7.9
02_02_0629 + 12386214-12386533,12386666-12386749,12386834-123869... 27 7.9
01_05_0493 + 22691391-22691457,22691607-22691776 27 7.9
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +1
Query: 109 PCGCPKTCRDPAPDCKGVCRMGCYCEEGQVRNDTGHCVKLADC 237
PC P C P DCK C CE+ + + HC K C
Sbjct: 88 PCK-PPPCEKPPEDCKPKPCHCCSCEKPKPKPKPCHCEKPKPC 129
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +2
Query: 32 VLCSPSVLPALSVKWQPYVDRTRGSYRAVARRPAETLRQTARVSAGWAATVKRVKLETTR 211
V+ P+ PA++ +PYV + + V+ + T T SA + R +E+TR
Sbjct: 2 VIPPPARAPAITKFLKPYVLKMHFTNNFVSAQVIHTPSATVACSASSQEKLLRPSMESTR 61
Query: 212 DTASNLLIVHLL 247
D A+ I LL
Sbjct: 62 DVAAAAKIGKLL 73
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 20 LYSCVLCSPSVLPALSVKWQPYVDRTRGSYRA 115
LY V+ P P+L+V+W P R+ GS R+
Sbjct: 29 LYDLVISQPLEWPSLTVQWLPSHSRSPGSARS 60
>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 223 KLADCPPIGAAYRLDTTEPRANGGICPDDEEYRFCEPCNKTCAN 354
+++ CPP G L + AN G+ DDE + E ++C N
Sbjct: 1766 QISTCPPYGTGAALYPLKNGANAGM--DDEMLQLWEAAERSCKN 1807
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +1
Query: 109 PCGCPKTCRDPAPDCKGVCRMGCYCEEGQVRNDTGHCVK 225
PCG A DC+ C C+C + + G C K
Sbjct: 353 PCGV-LAAGTSAADCQAACMSDCFCVAALLDTNDGTCTK 390
>06_03_0260 - 18857970-18858737,18858909-18859145
Length = 334
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +1
Query: 169 MGCYCEEGQVRNDTGHCVKLADCPPIGAAYRLDTTEPRANGGICPDDEEYRFCEPCNKTC 348
+G + E G D L+ +G A+ D E R +GG DD + + +TC
Sbjct: 180 LGVFREHGLDERDL---TALSGAHTVGKAHSCDNFEGRIDGGEGYDDIDPSYAAELRRTC 236
Query: 349 ANPN 360
P+
Sbjct: 237 QRPD 240
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 28.3 bits (60), Expect = 3.4
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Frame = +1
Query: 127 TCRDPAPDCKGVC--RMGCYCEEGQVRNDTGHCVKLADCPPIGAAYRLDTTEPRANGGIC 300
+C DP P C VC ++ C +V G DCPP R++ + G
Sbjct: 427 SCLDPIPTCDKVCDKKLPCGVHRCKVTCHEG------DCPP--CVVRVEQRCRCGSSGQM 478
Query: 301 PD-----DEEYRFCEPCNKTCANPNPICRAQCARGC 393
+ +EE+R CNK C R +C+ C
Sbjct: 479 VECYKVLEEEFR----CNKPCGRKKNCGRHRCSECC 510
>04_04_0998 -
29996117-29996242,29996345-29996486,29996613-29996812,
29997112-29997497,29997769-29998318,29998949-29999296
Length = 583
Score = 28.3 bits (60), Expect = 3.4
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Frame = +1
Query: 112 CGCPKTCRDPAPDCKGVCRMGCYCEEGQVRNDTGHCVKLADCPPIGAAYRLDTTEPRANG 291
CG D +CK E Q+ G+ V+L+ P+G R P+
Sbjct: 484 CGKAIKGYDHFSECKLFAPRDISAWERQMEEQYGNHVRLS-LRPVGGTIRC----PKCRE 538
Query: 292 GICPDDEEYRFCEPCNKTCANPNPICR--AQCARGCF 396
DDE+Y FC C AN +CR Q RG F
Sbjct: 539 RNFKDDEKYIFCWACR---ANYCTMCRREVQDKRGHF 572
>03_01_0658 +
4818401-4818540,4818605-4819201,4819694-4819949,
4820038-4820723,4821009-4821147,4821378-4821514,
4821805-4822077,4822175-4822382,4822660-4822731,
4823230-4823460,4824269-4824532,4825127-4825268,
4825355-4825467
Length = 1085
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 178 YCEEGQVRNDTGHCVKLADCPPI 246
+CE Q R D C+KL PP+
Sbjct: 296 FCESCQKRVDATRCIKLRSLPPV 318
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 79 TLCRPNERLLPCGCPKTCRDPAPDCKGVCRMGC 177
TL R LLP P+ C P P C+G GC
Sbjct: 30 TLGRAVFSLLPS--PRHCESPCPACRGRVASGC 60
>04_03_0852 + 20289439-20289721,20289858-20290642
Length = 355
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 79 TLCRPNERLLPCGCPKTCRDPAPDCKGVCRMGCYCE 186
T P+ + P CP+ CRD C++ C CE
Sbjct: 62 TASGPDCTVEPRACPRGCRDMCYVHCPTCKLVCLCE 97
>01_07_0241 + 42231224-42232615
Length = 463
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 201 SNLTLFTVAAHPADTLAVWRRVSAGLRATA 112
SN T++ HP DTL V + + G R TA
Sbjct: 173 SNRTVWQSFDHPTDTLVVGQSLKQGARLTA 202
>01_06_0194 - 27368563-27370956
Length = 797
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = -3
Query: 255 SSSNRWTISKFDAVSRVV---SNLTLFTVAAHPADTLAVWRRVSAGLRATAR 109
SS T++ D + V+ SN T++ P DTL W+ ++ +R +R
Sbjct: 124 SSGKHTTVTLLDTGNLVIKDSSNSTVWQSFDSPTDTLLPWQNLTKNIRLVSR 175
>06_01_1188 + 10219546-10219664,10220855-10223660
Length = 974
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 459 IFEHSSILTQLPSESRSKPSLETPSRTLRTTY 364
I E +LPSE S PSLE R + +Y
Sbjct: 392 IMEWGKFYRELPSELESNPSLEAMRRMVTLSY 423
>04_04_0881 + 29055724-29059197
Length = 1157
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 136 LGRSSGNRTVGASRSVYIGLPLDRQCRKYRRRTQDTRIK 20
LG G +V AS G PL+ +C YR+ + R++
Sbjct: 725 LGSRFGTPSVFASNPNLCGPPLENECSAYRQHRRRQRLQ 763
>02_02_0629 +
12386214-12386533,12386666-12386749,12386834-12386972,
12387990-12388061,12388158-12388252,12388397-12388483,
12388554-12388629,12388738-12389031,12389526-12389665,
12389751-12389939,12390028-12390118,12390206-12390332,
12391146-12391253,12391343-12391433,12391676-12391685
Length = 640
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 145 PDCKGVCRMGCYCEEGQVRNDTGHCVKLADCPPIGAA 255
P C+G+C C C + + TG V A GAA
Sbjct: 254 PKCRGICNCSC-CRRKKGQQPTGRLVHTAKKGEQGAA 289
>01_05_0493 + 22691391-22691457,22691607-22691776
Length = 78
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 357 RIGTCFIARLAKSILFIIRTNAAVGSRLCCI 265
RIGTC L + F+ + AA CC+
Sbjct: 3 RIGTCAAIALLVLVAFVASSGAAADQPRCCV 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,002,191
Number of Sequences: 37544
Number of extensions: 356703
Number of successful extensions: 1248
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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