Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J19
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    28   0.80 
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   1.4  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   2.4  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   3.2  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    26   3.2  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   5.6  
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   5.6  
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr...    25   7.4  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    25   9.8  

>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 236 ISGRDIKNIAMPSKYNTNPSDNSVAFDDDDNSQNIVPTARYK 361
           +   D ++ A  S  N  PSD SVA  D  +SQ+  P A Y+
Sbjct: 150 LKSNDSQDTAFQSSRNM-PSDTSVASPDYSHSQSSSPIANYQ 190


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 245 RDIKNIAMPSKYNTNPSDNSVAFDDDDNSQNIVPTARY 358
           + +  + +P  ++T   D S  FDDDD    +VP +++
Sbjct: 322 KKVDRVNVPVVHDTTAFDPST-FDDDDGHYKVVPNSKF 358


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 239 SGRDIKNI-AMPSKYNTNPSDNSVAFDDDDNSQ 334
           +G  IK + + P+ + T P D+  A D+++NS+
Sbjct: 614 TGHTIKELRSTPNSHGTVPDDSIFAMDNEENSE 646


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 360 NSCDRSLEWRPVCGSNGVTYK-NAQDLLCSQFCGIDVQFKKNDSMYRSYVNDI 515
           ++C   L W+     NG +YK +  + L  Q      +F  N+S+Y  + N I
Sbjct: 155 STCGGGLRWQAFAWLNGYSYKASVSNALLFQLSSRLARF-TNESVYSDWANKI 206


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 272 SKYNTNPSDNSVAFDDDDNSQNIVPT 349
           SKY ++ S  +   +DDDNSQ  +PT
Sbjct: 352 SKYASSLSTTNKFSEDDDNSQIEIPT 377


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 318 SSKATELSEGFVLYLLGMAMFLISRPLIHNSSHTIKIQDL 199
           SS+  + ++    + LGM +F +  P   N     K+QDL
Sbjct: 505 SSQHNKFTKKIDTFSLGMVLFELLHPFQTNMERATKLQDL 544


>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +3

Query: 351 QGINSCDRSLEWRPVCGSNGVTYKNAQ-----DLLCSQFCGIDVQFKKNDSMYRS 500
           +G+N   RSL+W+P  G N V   N         +  Q  G++V+   N+  Y +
Sbjct: 90  EGLNLFQRSLKWKP--GDNVVILDNEHPNQGFGWIALQNDGLEVRLVPNEGQYHA 142


>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 236 ISGRDIKNIAMPSKYNTNPSDNSVAFDDD--DNSQN 337
           ++  D  N+   +  + NP+D +V  +DD  DN++N
Sbjct: 213 VTDNDSSNVNSSTNESPNPTDINVCSNDDATDNTEN 248


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 375 SLEWRPVCGSNGVTYKNAQDL-LCSQFCGIDVQFKKNDSMYRSYVNDI 515
           +L W P  GS  V Y NA+D+   +QF       KK   +  S V ++
Sbjct: 98  TLIWFPPDGSEPVQYSNARDVDSLTQFVSEKTGIKKRKIVLPSNVVEL 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,250
Number of Sequences: 5004
Number of extensions: 39131
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)