Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J19
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0297 + 22056644-22058212,22058316-22058423,22058513-220586...    28   4.3  
05_05_0248 + 23598461-23598652,23599600-23599744,23599816-235999...    27   7.5  
07_03_0128 + 13870979-13871586,13871955-13871970                       27   10.0 
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350...    27   10.0 

>11_06_0297 +
           22056644-22058212,22058316-22058423,22058513-22058678,
           22059000-22059056,22059382-22059479,22059556-22059765,
           22060469-22060582,22060819-22060948,22061165-22061298,
           22062279-22062359,22062798-22062872,22063210-22063221
          Length = 917

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +2

Query: 248 DIKNIAMPSKYNTNPSDNSVAFDDDDN 328
           DI+  A+   Y T+P+DN+VA+D DD+
Sbjct: 134 DIRR-AVTIDYPTDPADNNVAYDLDDD 159


>05_05_0248 +
           23598461-23598652,23599600-23599744,23599816-23599966,
           23600049-23600174,23600253-23600333,23600706-23600898,
           23600990-23601260,23601807-23602000,23602086-23602105,
           23602352-23602394
          Length = 471

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 357 INSCDRSLEWRPVCGSNGVTYKNAQDLLCSQFCGID 464
           + S +  L W P C +N +   + QDL+ S +C  D
Sbjct: 343 VTSFEDHLLWHPDCNTNNIYITSDQDLIIS-YCKAD 377


>07_03_0128 + 13870979-13871586,13871955-13871970
          Length = 207

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 280 VFARHGD-VLNISTANSQFFAHNKNPGSM*VTELISQ 173
           VF  HGD VLNIS     F A  +NP S  +T L+++
Sbjct: 79  VFDSHGDSVLNISRYGRVFKADFENPVSPVITCLVAK 115


>01_07_0021 -
           40533864-40534583,40534779-40534814,40534909-40535048,
           40535837-40535922,40536430-40536653,40536770-40536865,
           40538766-40538833,40539945-40540055,40540799-40540955
          Length = 545

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 346 NSKV*IHVIVHLNGVQFVVQTVSRIKTLRIYC 441
           N++   HV+V  NG   VV  V  I  +R++C
Sbjct: 31  NARSHAHVLVKNNGEFLVVDVVGLISEMRLFC 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,247,057
Number of Sequences: 37544
Number of extensions: 216688
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)