Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J19
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    33   0.18 
U97550-2|AAK18979.1|  280|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AC006674-2|AAF39941.2|  437|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 366 CDRSLEWRPVCGSNGVTYKNAQDLLCSQFCGIDVQFKKN 482
           CD     RPVCG++ VTY N   L C Q    D+ F  N
Sbjct: 19  CDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYN 57



 Score = 30.3 bits (65), Expect = 0.96
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 366 CDRSLEWRPVCGSNGVTYKNAQDL 437
           CD S +  P+CG+NGVT+ NA  L
Sbjct: 772 CDNSYD--PLCGTNGVTFTNACSL 793



 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 357  INSCDRSLEWRPVCGSNGVTYKNAQDLLCSQFCGIDVQFKKN 482
            I +CD S+ + PVC + GVT+ N    +C       +Q KKN
Sbjct: 921  IENCDISV-FSPVCDTEGVTHAN----MCLMDQNACIQMKKN 957


>U97550-2|AAK18979.1|  280|Caenorhabditis elegans Hypothetical
           protein T20F7.3 protein.
          Length = 280

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 439 CARSSVESMYNLKKMTACTDPMSTTSTN 522
           C   S   + +LKK T C+DPMS  + N
Sbjct: 68  CYIFSFGKVISLKKCTVCSDPMSMKTIN 95


>AC006674-2|AAF39941.2|  437|Caenorhabditis elegans Hypothetical
           protein K12H6.12 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 361 IHVIVHLNGVQFVVQTVSRIKTLRIYCARSSVESMYNLKKMTA 489
           +HVI     ++   QT++ +KT   Y  R  V+ +   + +TA
Sbjct: 269 VHVIPIRKAIRGKEQTITNLKTYHCYECRQDVQCVLGAENLTA 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,373,854
Number of Sequences: 27780
Number of extensions: 219829
Number of successful extensions: 696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)