Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J18
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    26   2.1  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       25   3.6  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   3.6  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    24   8.4  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 43  VTPPVIIPILANSAAPAETSDSDAASLK 126
           VT P++IP+LAN   P E   S  A ++
Sbjct: 86  VTRPLLIPVLANLNVPHEVRVSSLARVQ 113


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 2   RHQNRRSSMYRAYL*HHPSLYRSWQTVL 85
           RH   R  M R ++  HPSL  ++ TVL
Sbjct: 256 RHDQVRDVMVRGHIYLHPSLTEAFGTVL 283


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 387 LSCELHNYTCDIFLVIR 337
           LSC  H+Y+ D+FL+IR
Sbjct: 243 LSCWDHHYSDDVFLLIR 259


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +1

Query: 22  IDVPRLSVTPPVIIPILANS-----AAPAETSDSDAASL 123
           IDV    VTPP+ +  + +S     A PA  +D+D  S+
Sbjct: 196 IDVQTNIVTPPITVTAVPDSPNPPAATPATVADNDDLSI 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,151,723
Number of Sequences: 5004
Number of extensions: 14691
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)