Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J18
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129...    29   1.5  
01_07_0069 + 40869496-40869535,40869627-40869663,40870241-408703...    29   2.0  
07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470     28   2.7  
01_05_0455 + 22387512-22387629,22388344-22388852                       28   2.7  
03_06_0297 - 32924162-32924605                                         28   3.5  
03_01_0401 - 3108477-3108689,3108787-3108933,3109022-3109234,310...    27   6.1  
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511...    27   6.1  
09_04_0652 - 19227686-19227926,19229368-19232294                       27   8.1  

>12_01_0173 -
           1292164-1293036,1294063-1294098,1294195-1294334,
           1295592-1295748,1295862-1296035,1296146-1296396,
           1299446-1299590
          Length = 591

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +1

Query: 4   PPKPEIIDV--PRLSVTPPVIIPILA-NSAAPAETSDSDAASLKP 129
           PP P I+    PRLSV PP+ +P  + N + P +     A    P
Sbjct: 519 PPLPNIMSAGFPRLSVPPPLPLPTQSQNQSQPQQQQSPQAPQQSP 563


>01_07_0069 +
           40869496-40869535,40869627-40869663,40870241-40870387,
           40872360-40872405,40872580-40872846,40873151-40873540
          Length = 308

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 10  KPEIIDVPRLSVTPPVIIPILANSAAPAETSDSD 111
           K +I D   +++ PP I P+ A+  + A   DSD
Sbjct: 83  KTDIFDTKEMAIAPPRIQPVSAHLHSSASPKDSD 116


>07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470
          Length = 445

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 16  EIIDVPRLSVTPPVIIPILANSAAPAETSDSDAASLKP 129
           E  DVPR  V   ++  +  N  +PA TS  D  S KP
Sbjct: 315 EASDVPRTGVAAKLMKCLNENGISPASTSKLDVHSQKP 352


>01_05_0455 + 22387512-22387629,22388344-22388852
          Length = 208

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 4  PPKPEIIDVP-RLSVTPPVIIPILANSAAPA 93
          PP P  + +  RLS +  V++P+L+  AAPA
Sbjct: 5  PPSPSFLFLQIRLSSSSVVLLPVLSGGAAPA 35


>03_06_0297 - 32924162-32924605
          Length = 147

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 1   APPKPEIIDVPRLSVTPPVIIPILANSAAPAE 96
           +PP PE+ DVPR    PP   P L     P E
Sbjct: 99  SPPMPEVPDVPRNPDVPPPKPPELDPPRPPPE 130


>03_01_0401 -
           3108477-3108689,3108787-3108933,3109022-3109234,
           3109321-3109938,3110045-3110584,3110941-3111041,
           3111208-3111325,3111450-3111535,3111888-3112002
          Length = 716

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 1   APPK-PEIIDVPRLSVTPPVIIPILANSAAPAETSDSD 111
           APP+ P +   P  +  PP   P  A +AAP     +D
Sbjct: 5   APPQVPVVAPAPAAAAAPPAPAPAAAATAAPVADQTTD 42


>01_01_0668 -
           5109476-5110112,5110196-5110439,5110519-5110917,
           5111390-5111668,5111886-5112257,5112371-5112475,
           5112832-5112909,5112990-5113199,5113287-5113406,
           5113508-5113606,5113685-5113750,5113914-5114141,
           5114216-5114521,5115324-5115381
          Length = 1066

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +1

Query: 13  PEIIDVPRLSVTPPVIIPILANS---AAPAETSD-SDAASLKP 129
           P    VPR SV PPV  PI+A +    A A +SD S+  S+ P
Sbjct: 216 PSTSGVPRESVKPPVAPPIIAQAPRQQALAPSSDHSNGNSVPP 258


>09_04_0652 - 19227686-19227926,19229368-19232294
          Length = 1055

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 31  PRLSVTPPVIIPILANSAAPAETSDSD 111
           P  +V PP + P+  ++A PA   D D
Sbjct: 574 PEDAVAPPAVSPLPEDNAQPASVGDGD 600


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,329,560
Number of Sequences: 37544
Number of extensions: 123645
Number of successful extensions: 354
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)