Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J14
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    27   0.84 
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   1.1  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   2.6  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   2.6  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    24   4.5  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    24   5.9  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 225 CTREIKQVCGSDGVTYGNPCLLNCA 299
           C R +  +  S+ V YG P  LNCA
Sbjct: 110 CERLLPYLVASNPVNYGRPWRLNCA 134


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 151 NGREHSSEHLLG*VFPSVPQTGAYMKVQTQGSASSHVPSFT 29
           N    +  ++L    PS+ Q   Y  +Q  GS+++ +PSF+
Sbjct: 158 NAYSFTGSNILPTQSPSLNQMQDYQNLQQNGSSNTTIPSFS 198


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -2

Query: 214 CISATSTSWHSPRCFISRDGANGREHSSEHLLG*VFPSVPQTGAYMKVQTQGSASSHVP 38
           C++  ST+W S   F S D      +  + LL  +   +P+T   M+    G  S  VP
Sbjct: 376 CLNDWSTTWSSVSTFASEDNKLEELNRLKSLLS-ISSHLPKTLQLMEPLLDGILSQLVP 433


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 14  QRFENRERGYV*GSRSLRLY 73
           Q  +  +RGYV G R+LRLY
Sbjct: 901 QHKDTYDRGYVRGLRTLRLY 920


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 189 QEVEVADIQPCICTREIKQVC 251
           QE+E   +  C CT +  + C
Sbjct: 743 QEIECCSVDDCTCTHDAPEEC 763


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 211 ISATSTSWHSPRCFISRDGANGREH 137
           IS  ST WH+P  FIS +    R++
Sbjct: 621 ISVYSTQWHNP--FISEEAQRCRDN 643


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,293,556
Number of Sequences: 5004
Number of extensions: 24387
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)