Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J14
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              29   0.013
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   1.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   1.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   1.9  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          20   5.9  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              20   7.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   7.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   7.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 29.1 bits (62), Expect = 0.013
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
 Frame = +3

Query: 135 ECSRPLAPSLEMKHRG---ECQEVEVADIQPCICTREI----KQVCGSDGVTYGNPCLLN 293
           E SR + P    K+ G   EC+    + I  C+C R+     + VC S+G  Y N C L+
Sbjct: 74  ESSRSIDPCAS-KYCGIGKECELSPNSTIAVCVCMRKCPRRHRPVCASNGKIYANHCELH 132

Query: 294 CA 299
            A
Sbjct: 133 RA 134



 Score = 25.8 bits (54), Expect = 0.12
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 69  CTFIYAPVCGTDGNTYPNKCSL 134
           C   + PVC ++G  Y N C L
Sbjct: 110 CPRRHRPVCASNGKIYANHCEL 131


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 102 DGNTYPNKCSLECSRPLAPSLEMKHR 179
           DGN+Y N     CSR  +   + K R
Sbjct: 241 DGNSYRNDGERSCSRDRSREYKKKDR 266


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 202 TSTSWHSPRCFIS 164
           T  SWHSP   IS
Sbjct: 152 TEASWHSPEAHIS 164


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 111 CSRLCHRPGHI*RY-RRKDRLPHTY 40
           C RLC+R G + R+    + +P  Y
Sbjct: 247 CERLCNRLGRVKRFINWHEPIPEAY 271


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +3

Query: 69  CTFIYAPVCGTDGNTYPNKCSLECSRPLAPSLEMKHR 179
           C   Y  +   D N+Y N     CSR  +   + K R
Sbjct: 230 CHSRYEDLRHEDRNSYRNDGERSCSRDRSREYKKKDR 266


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = +1

Query: 61  LASVPSYMPRSVAQTGTLTLIN 126
           +A    Y P+     GTL  +N
Sbjct: 84  IAHTVKYCPKGTKNPGTLATVN 105


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 247 TCLISRVQIHGCISA 203
           TC IS    +GC+ A
Sbjct: 171 TCSISNSYTNGCVEA 185


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
          receptor protein.
          Length = 1040

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 51 PHTYPLSRFSN 19
          P  YPL RF N
Sbjct: 67 PSVYPLLRFEN 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,004
Number of Sequences: 438
Number of extensions: 1741
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)