Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J11
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    27   1.0  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    26   2.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   4.1  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   4.1  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   5.5  

>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 306 GASRRTSPTYPSAISNSGVESGRVD 232
           G +  T+  YP++IS SGV S  +D
Sbjct: 67  GITPGTTTIYPTSISTSGVSSNNID 91


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 233 TVREVRKGIIHYKEMAPQNHDPPWVFLVYLFNCEVEPPSNSSKSSK 96
           T +  RK +   K  APQN D P +  +   N + E  + S  + K
Sbjct: 80  TPKSYRKSVKRIKHDAPQNEDIPVMKGLAPINADTESKAESMAAGK 125


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 87  LLWAHTNYYPQ*PLILNNIITNYI 16
           ++W ++N Y + P I+N+ I+N +
Sbjct: 371 VVWTYSNQYKEEPSIMNSNISNIL 394


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 191 MAPQNHDPPWVFLVYLFNC 135
           M P    PPW+FLV    C
Sbjct: 183 MPPNKEQPPWLFLVLPSPC 201


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 197 KEMAPQNHDPPWVFLVYLFNCEVEPPSNSSKSSKQI 90
           KE   +N   P  +  Y+ + + EP   SSKSS  I
Sbjct: 71  KESYDKNKGTPPDYTSYVSHSDAEPEQASSKSSTSI 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,492,504
Number of Sequences: 5004
Number of extensions: 27938
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)