Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J11
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    27   4.7  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    27   4.7  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z35639-2|CAA84694.1|  351|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decappi...    26   8.2  

>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
           protein F13B9.1c protein.
          Length = 1609

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 194 EMAPQNHDPPWVFLVYLFNCEVEPPSNSSKSSKQIPY 84
           + A QN+   W    Y    + +PP   S SS+QI +
Sbjct: 85  QTAEQNYQQQWAQQQYQNQAQPQPPQQPSLSSQQIQH 121


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
           protein F13B9.1b protein.
          Length = 1614

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 194 EMAPQNHDPPWVFLVYLFNCEVEPPSNSSKSSKQIPY 84
           + A QN+   W    Y    + +PP   S SS+QI +
Sbjct: 85  QTAEQNYQQQWAQQQYQNQAQPQPPQQPSLSSQQIQH 121


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
           protein F13B9.1a protein.
          Length = 1632

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 194 EMAPQNHDPPWVFLVYLFNCEVEPPSNSSKSSKQIPY 84
           + A QN+   W    Y    + +PP   S SS+QI +
Sbjct: 85  QTAEQNYQQQWAQQQYQNQAQPQPPQQPSLSSQQIQH 121


>Z35639-2|CAA84694.1|  351|Caenorhabditis elegans Hypothetical
           protein D2045.5 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 105 FRGI*RRFYFAVK*VNKKHPGRVVVLWGHFFIVNNTFTHLPYRLLS 242
           FRG  R  Y ++   N+K  GRV  LW   +++      LP+R L+
Sbjct: 188 FRGTPR--YCSMNVHNRKEQGRVDDLWSWLYMLIELHCGLPWRRLT 231


>AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical
           protein F52G3.4 protein.
          Length = 1009

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 215 KGIIHYKEMAPQNHDPPWVFLVYLFN 138
           KG+  + E  PQ  DP +VF+ Y FN
Sbjct: 382 KGVYAFPERMPQ--DPGYVFVAYSFN 405


>AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decapping
           enzyme protein 1 protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 194 EMAPQNHDPPWVFLVYLFNCEVEPPSNSSKSSKQIP 87
           +MAPQ   PP V L+ L      PP  S+ + +Q+P
Sbjct: 170 QMAPQA--PPKVDLLQLIKSAQNPPQKSAATIEQMP 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,221,149
Number of Sequences: 27780
Number of extensions: 156008
Number of successful extensions: 300
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)