Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J09
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    25   6.7  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   6.7  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   6.7  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   6.7  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   8.8  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   8.8  

>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 503 LLHNIERLA*KLIELVDRCLEHL 435
           LLHNIE  A + +EL  +C + L
Sbjct: 88  LLHNIESNAKRFVELFSQCADAL 110


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 394 FSPSEKY--HRIIGLDSLILKYNFSVTSIPDSTMGMEATLDTTSSRGIL 254
           FSP  K   ++IIG++ L L Y   +  I    MG+  T  T +   +L
Sbjct: 381 FSPDIKLQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAFFSLL 429


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 272 FEPRHPRAFRLCHCMSVGFVSGLKVCFGFLSDRTFDF-FVNAHNACAVITFFIHVPVCRH 96
           F P+ P  ++    +++G V+ L    G+    +F + F+N       IT F    + R+
Sbjct: 96  FNPKTPNKWKFLFILNIG-VTALITVLGWSQHTSFFYAFLNIRTLVCGITIF--TEIARY 152

Query: 95  SAYFNLCLIFK 63
           S Y +   + K
Sbjct: 153 SMYHSTLSVEK 163


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 105  NGDVYKKCYNGTCIVGVNKKVKGSIAKKAEAYLQAANKPHRHTVAKT 245
            NGD++ +C+  T  +   K++  +I       +Q   KP +    KT
Sbjct: 893  NGDMFLRCFFKTEFITTLKRINRNIQVIVGPTIQYCRKPGKVQTVKT 939


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 480 KSLDVVEKRVPSI--NLPPQTMYSETRQYV 563
           +S+D+  K+V  I   L P+TMY +T  YV
Sbjct: 305 QSIDLSNKKVCMIAATLRPETMYGQTNCYV 334


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = +1

Query: 139 HALWALTKKSKVRSLR-KPKHTFKPLTNPTDIQWQRRKARGCRGSKLCQGSLPYPS*NQG 315
           H LWAL      R L+  P   F  L  P D + +  + R    S++             
Sbjct: 58  HVLWALKLSRYCRKLKTSPIVVFDNL-KPNDFKAEEHEKRSLISSQIVNQRQVVQEQMYF 116

Query: 316 LTSPKNCTSESRNPT 360
           L + KNC  ++  PT
Sbjct: 117 LCNLKNCLIDNNFPT 131


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 470 LIELVDRCLEHLNSWQGKLNPRGERFLTK*EIPSDYRVGFLD 345
           ++ L    +    SW GK +PR + F ++ E   D+  G +D
Sbjct: 599 MLNLPPEVIRRKGSWTGKKDPREDMFRSRFE-KFDWTKGLID 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,601
Number of Sequences: 5004
Number of extensions: 64568
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)