Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J09
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110...    29   2.3  
06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652     29   3.0  
06_01_0238 + 1815258-1815581,1816286-1816530,1816612-1816765,181...    29   3.0  
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592     29   3.0  
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979...    29   3.9  
04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814           28   5.2  
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351...    28   6.9  
03_02_0206 + 6402526-6403933,6405018-6405637                           28   6.9  
03_02_0011 - 4909292-4909434,4909520-4909626,4910100-4910171,491...    27   9.1  
02_05_0881 + 32473208-32473575,32473742-32473826,32473991-324740...    27   9.1  

>02_04_0038 -
           19110520-19110574,19110684-19110811,19110912-19111085,
           19111189-19111320,19111391-19111489,19111680-19111751,
           19111831-19111887,19111957-19112130,19112211-19112305,
           19112478-19112577,19112672-19112824,19112896-19114026,
           19114621-19114731,19114829-19114991,19115364-19115458,
           19115613-19115804,19115929-19116069
          Length = 1023

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 361 GLDSLILKYNFSVTSIPDSTMGMEATLDTTSSRGILAPFVFATVCL 224
           G D+++L ++ +     +      + L  TS R +L PF+FA  CL
Sbjct: 57  GFDTVLLYWDKTAPGYCEKAGIYVSHLSQTSLRAVLKPFLFAATCL 102


>06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652
          Length = 717

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/95 (22%), Positives = 36/95 (37%)
 Frame = +1

Query: 46  LYCK*RLNIKHKLK*AEWRQTGTCIKNVITAHALWALTKKSKVRSLRKPKHTFKPLTNPT 225
           L  K +  + HK + A +R      + V   +     +   + +    P+  F P     
Sbjct: 420 LEAKHKEQVSHKRRLANFRNQQGANQRVRYTNPYLGGSSSQQQQPRSAPRPQFMPGQGRR 479

Query: 226 DIQWQRRKARGCRGSKLCQGSLPYPS*NQGLTSPK 330
           D+Q Q+R    C  S+  +   P P   QG   P+
Sbjct: 480 DVQGQQRLCFNCFESRHFEDKCPKPRRQQGQAPPR 514


>06_01_0238 +
           1815258-1815581,1816286-1816530,1816612-1816765,
           1817043-1817257,1817351-1817468,1817685-1817895,
           1818133-1818194,1818306-1818524
          Length = 515

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +3

Query: 267 LEVVSRVASIPIVESGIDVTEKLYFRIKESNPIIRWYFSLGEKSLATG 410
           +E++ ++ SIP VE  + + E+   + + S+   R+Y   G+K  + G
Sbjct: 269 IEIIDKLISIPYVEMTLRLMERFGVKAEHSDSWDRFYIKGGQKYKSPG 316


>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
          Length = 853

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 235 WQRRKARGCRGSKLCQGSLPYPS*NQGLTSP 327
           W+ R  RG R S  C  +  +P  +  LTSP
Sbjct: 298 WESRHRRGSRSSARCAAAADHPGCSDKLTSP 328


>04_03_0809 +
           19896801-19897170,19897265-19897513,19897850-19897900,
           19898007-19898267,19898427-19898479,19898746-19898887,
           19898972-19899226,19899616-19900640
          Length = 801

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -3

Query: 224 VGFVSGLKVCFGFLSDRTFDFFVNAHNACAVITFFIHVPVCRHSAYFNLCLIFKRHLQY 48
           V F+ GL      ++ RT     NA+  C V TF     V  H     + LI+K+HL +
Sbjct: 435 VNFMMGLASIIVTIAFRTTTSIGNAYGICVVTTFM----VTTHLMTVVMLLIWKKHLVF 489


>04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814
          Length = 582

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 123 KCYNGTCIVGVNKKVKGSIAKKAEAYLQAANKPHRHTV 236
           +C++  C+VG   + +  +A +   +   A+ P RHT+
Sbjct: 242 RCHDHICLVGRRSRPRDEVAAEITLFYLGASVPLRHTL 279


>12_01_0445 -
           3513733-3513819,3514392-3514613,3514730-3514999,
           3515033-3517110,3517649-3517976,3519136-3519255,
           3519299-3519352,3520115-3520154,3520344-3520411
          Length = 1088

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 401 RHGDSTCPASCSNVRDTD 454
           RHG S+ P S SNVRD D
Sbjct: 148 RHGQSSEPQSSSNVRDED 165


>03_02_0206 + 6402526-6403933,6405018-6405637
          Length = 675

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 234 VAKTKGARMPRLEVVSRVASIPIVESGIDVTEKLYFRIKESNPIIRWYFSLGEKS 398
           V + K   +P  E   R+A+I  V+  + V  + Y+  K+   ++  Y S+G  S
Sbjct: 411 VKRLKDVDLPEPEFRERIAAIGAVQHELVVPLRAYYFSKDEKLLVYDYMSMGSLS 465


>03_02_0011 -
           4909292-4909434,4909520-4909626,4910100-4910171,
           4910713-4910803,4911136-4911272,4911377-4911417,
           4911681-4911746,4912756-4913082
          Length = 327

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 117 YKKCYNGTCIVGVNKKVKGSIAKKAEAYLQAANKPHRHT 233
           Y +C NGT I+ V      S +   ++ + AA K H+ T
Sbjct: 251 YSQCENGTEIINVQNSWLSSNSNVPKSPVNAAEKSHQST 289


>02_05_0881 +
           32473208-32473575,32473742-32473826,32473991-32474053,
           32474199-32474241,32474737-32474796,32475001-32475301,
           32475554-32475668,32476168-32476272,32476338-32476517
          Length = 439

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -1

Query: 610 SSTAVPSCFTESARRRTYCLVSEYIVCGGKLMEGTLFSTTSSD 482
           S  AV SCF    RRR    V+   V GG +     F   +SD
Sbjct: 209 SREAVASCFVLRRRRRVASSVTTCFVGGGGVAAADPFEAAASD 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,717,947
Number of Sequences: 37544
Number of extensions: 429180
Number of successful extensions: 1126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)