Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_J07
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 31 0.15
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 29 0.59
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.8
SPAP14E8.05c |||UPF0136 family protein|Schizosaccharomyces pombe... 27 1.8
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 2.4
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 25 5.5
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 5.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.3
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal... 25 7.3
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 25 9.6
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.7 bits (66), Expect = 0.15
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 183 YRTCFSISHYPSGSYRCCISKSQNIDTHVELYSIAVVSSFDFLSEYVTLLEN 28
YR CF++S + SG+Y+ + + Q + + L + V FL +EN
Sbjct: 146 YRLCFTLSAFLSGNYKESLEQIQYLISSCNLSPLVVSRLISFLPRICEHIEN 197
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 28.7 bits (61), Expect = 0.59
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -1
Query: 150 SGSYRCCISKSQNIDTHVELYSIAVVSSFDFLSEYVTLLENFLLEKDVPK 1
S Y+ + + + ++ +A +SSFD LS + ++N L E +VPK
Sbjct: 1755 SEDYKSNVKEIKGNKSYDSYEIVARISSFDSLSTLLRPVKNVLFETNVPK 1804
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +1
Query: 265 TFMXXXXXXXXXXMGYRYYNGRKFMPAGLMFCLSVGMIAKLLVNNVGSSPTPV 423
T M G YYN F+P+ ++ S+ + L + + S+ TPV
Sbjct: 205 TSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTSIITSTSTPV 257
>SPAP14E8.05c |||UPF0136 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 27.1 bits (57), Expect = 1.8
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +1
Query: 139 VAAGGIMGYAKAGSIPSLGAGLIFGSLLGVGAYQISQDPS---NYTFMXXXXXXXXXXMG 309
+ GG++GY + S SL AG G+ + + + S NY F G
Sbjct: 14 LTVGGLIGYLRKKSKVSLIAGTALGANFAWASKLMERGSSQGINYAFYGSLVLLASS--G 71
Query: 310 YRYYNGRKFMP 342
R+Y RK +P
Sbjct: 72 PRFYKSRKPVP 82
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 20 SKKFSNSVTYSDRKSKELTTAIEYNSTWVSIFWDLLMQ 133
S K + +V + D + E+T I S+ +S+F+ ++ Q
Sbjct: 47 SSKLAGTVRFLDFREDEITRGITMKSSAISLFFKVISQ 84
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 5.5
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -2
Query: 512 PSFFSYKQHTIL-TAVTNVINCIIINFYPVFTGVGLEPTLFTNNLAIIPTDRQN 354
P +Y Q I T I I +NF P+ GVG ++T + T + N
Sbjct: 222 PHSLAYTQSVICKTYKVESIEEIFVNFNPIPIGVGAIAQVYTATIKKAATQQDN 275
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 71 LTTAIEYNSTWVSIFWD 121
L++ YN +W+S FWD
Sbjct: 461 LSSIYTYNVSWISDFWD 477
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 35 NSVTYSDRKSKELTTAIEYNSTWVSIFWDL 124
NS+ + + L TAI+ N + + WDL
Sbjct: 217 NSIAWHPNNATRLATAIDDNRNPIILTWDL 246
>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 112 ILGFAYAATVAAGGIMGYAKAGSIPSLGAGLIFGSLLGVGAYQIS 246
+LG YA GG+ G+ S GA L+ ++LG G ++
Sbjct: 120 VLGTRYAKD---GGVYGWNLKRKFISRGANLLASTVLGTGVSDVT 161
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 233 APTPNNDPNIKPAPNDG 183
APTP+N P+ APN G
Sbjct: 18 APTPHNTPSGTSAPNFG 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,035
Number of Sequences: 5004
Number of extensions: 44980
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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