Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_J07
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904 46 2e-05
04_04_0888 - 29098068-29098177,29098260-29098347,29099412-290994... 42 4e-04
03_05_0059 - 20359480-20359552,20359690-20359777,20360255-203603... 35 0.037
03_05_0156 + 21342982-21343186,21343326-21343375 35 0.049
02_05_0562 - 29970207-29970224,29970290-29970364,29971083-299714... 31 0.60
07_01_0169 - 1182240-1182253,1182887-1182964,1183518-1184640 29 1.8
02_03_0415 + 18805541-18805610,18805962-18806128,18806616-188066... 29 3.2
03_01_0058 - 478708-478731,478802-478834,478953-479100,479423-48... 28 5.6
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285... 27 7.4
06_02_0335 - 14591512-14591772,14594021-14594215,14594379-145946... 27 9.8
06_01_0354 - 2550061-2551033,2551125-2551385,2553079-2553274,255... 27 9.8
>04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904
Length = 207
Score = 46.0 bits (104), Expect = 2e-05
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +1
Query: 124 AYAATVAAGGIMGYAKAGSIPSLGAGLIFGSLLGVGAYQISQDPSNYTFM-XXXXXXXXX 300
AYAA V AGG MGY K+GS SL AG I +L Q+ P + +
Sbjct: 109 AYAALVGAGGAMGYMKSGSQKSLAAGGISALVLYFVHTQLPVRPVFASSIGLGISAALLS 168
Query: 301 XMGYRYYNGRKFMPAGLMFCLSVGMI 378
MG R+ K PAG++ +S+ M+
Sbjct: 169 VMGSRFKKSGKIFPAGVVSLVSLVMV 194
>04_04_0888 -
29098068-29098177,29098260-29098347,29099412-29099450,
29099722-29099786,29099863-29100082
Length = 173
Score = 41.5 bits (93), Expect = 4e-04
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 16/101 (15%)
Frame = +1
Query: 124 AYAATVAAGGIMGYAKAGSIPSLGAGLIFGSLLGVG------------AYQISQDPSNYT 267
AY A + GG Y ++GS S+ GL +L+G+ AY + Q P
Sbjct: 61 AYGALLLGGGAFAYVRSGSKGSIFGGLSGSALMGISFIGLLGGQNRILAYYLMQSPETKA 120
Query: 268 FMXX----XXXXXXXXMGYRYYNGRKFMPAGLMFCLSVGMI 378
G R YN RK +P+GL+ LS+G +
Sbjct: 121 LGDAVGFGSAFLFASVFGIRLYNTRKLVPSGLLLVLSLGAL 161
>03_05_0059 -
20359480-20359552,20359690-20359777,20360255-20360326,
20361765-20361963
Length = 143
Score = 35.1 bits (77), Expect = 0.037
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 127 YAATVAAGGIMGYAKAGSIPSLGAGLIFGSLL 222
Y V AGG++GYA+ GS SL G G+LL
Sbjct: 10 YGFAVLAGGVLGYARRGSTASLAGGAGAGALL 41
>03_05_0156 + 21342982-21343186,21343326-21343375
Length = 84
Score = 34.7 bits (76), Expect = 0.049
Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 127 YAATVAAGGIMGYAKAGSIPSLGAGLIF-GSLLGVGA 234
Y A V GG+ GY K GS SL AG F G+LL GA
Sbjct: 10 YGAAVLVGGVAGYLKRGSKASLAAGGGFGGALLLAGA 46
>02_05_0562 -
29970207-29970224,29970290-29970364,29971083-29971441,
29971572-29971713,29971906-29972025,29972139-29972216,
29972330-29972429,29972522-29972571,29972827-29972904,
29973624-29973751,29973776-29973977,29974045-29974144,
29974236-29974551,29974645-29974690,29975526-29975622,
29977254-29977258,29977643-29977708,29978631-29978690,
29979167-29979272,29979513-29979658,29980731-29980813,
29980951-29981056,29996243-29996266,29996378-29996438,
29996467-29996750,29996914-29997096
Length = 1010
Score = 31.1 bits (67), Expect = 0.60
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 206 YSDHYWVLELIR*AK--IHQITHLCWVPLVHWEV*WDTDTIMEES 334
+ D++ +L ++ K + + H+ W ++HW + TDTI+E+S
Sbjct: 520 HDDYHTMLRFLKARKFDVEKAAHM-WADMLHWRKDFGTDTILEDS 563
>07_01_0169 - 1182240-1182253,1182887-1182964,1183518-1184640
Length = 404
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 94 FNMGVDILGFAYAATVAAGGIMGYAKAGSIPSLGAGLIFGSLLGVGAYQISQD 252
+NMG L + V GGI+ A G++ LG G I GS+L + + +S D
Sbjct: 240 YNMGECSLSRIHPPVVYKGGIVVMAMGGNL--LGLGGIEGSILSMWSSDVSLD 290
>02_03_0415 +
18805541-18805610,18805962-18806128,18806616-18806645,
18807459-18807515,18808268-18808337,18808915-18810998
Length = 825
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +1
Query: 160 GYAKAGSIPSLGAGLIFGS 216
G + GSIPSLGAGL GS
Sbjct: 223 GLTRHGSIPSLGAGLQMGS 241
>03_01_0058 -
478708-478731,478802-478834,478953-479100,479423-480072
Length = 284
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = -3
Query: 202 NLPLTMV*NLL*HIPLSL----RQLPLLHKQIPKYRHP 101
N+P+ ++ L +PL+L R LPL HK P RHP
Sbjct: 41 NVPILLLVYTLAPLPLALLELRRHLPLPHKLQPGVRHP 78
>01_06_0848 +
32426550-32426613,32427013-32427167,32428470-32428526,
32428877-32428930,32429349-32429418,32429951-32432034
Length = 827
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 160 GYAKAGSIPSLGAGLIFGS 216
G + GSIPS+GAGL GS
Sbjct: 225 GLTRHGSIPSVGAGLQMGS 243
>06_02_0335 -
14591512-14591772,14594021-14594215,14594379-14594679,
14594930-14595051,14595287-14595466,14595514-14596337,
14596377-14596435,14596480-14597075
Length = 845
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +2
Query: 17 SSKKFSNSVTYSDRKSKELTTAIEYNSTWVSIFW 118
S ++++++ YS + K++ +E+ S W +I W
Sbjct: 656 SDREYAHTREYSPEQLKKIGMDVEFRSIWKAIGW 689
>06_01_0354 -
2550061-2551033,2551125-2551385,2553079-2553274,
2553443-2553632,2553750-2553983
Length = 617
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 17 SSKKFSNSVTYSDRKSKELTTAIEYNSTWVSI 112
S +KF + +Y D +S +++YNS+W I
Sbjct: 266 SCRKFVDLTSYIDSQSHASKGSVKYNSSWSMI 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,520,223
Number of Sequences: 37544
Number of extensions: 275216
Number of successful extensions: 619
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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