Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J07
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal enha...    29   2.9  
AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal en...    29   2.9  
U29377-10|AAA68717.1|  140|Caenorhabditis elegans Hypothetical p...    28   5.0  
U13019-10|AAC24442.1|  757|Caenorhabditis elegans Hypothetical p...    28   5.0  

>Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical
           protein F57A8.5 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -1

Query: 189 RWYRTCFSISHYPSGSYRCCISKSQNIDTHVELYS--IAVVSSFDFLSEYVTLLENFLL 19
           +W   CF  S YP     C   +  +   ++E++   +   +    + E  TLL+N L+
Sbjct: 55  KWSNNCFETSPYPLKCQSCRFQRCLDAGMYLEVHENIVEFENGNQKVDELTTLLQNLLI 113


>U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform a protein.
          Length = 427

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 102 GCRYFGICLCSNGSCRR 152
           GCR   IC C  G CRR
Sbjct: 407 GCRVIRICCCDEGVCRR 423


>AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal
           enhancer binding protein-1 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 102 GCRYFGICLCSNGSCRR 152
           GCR   IC C  G CRR
Sbjct: 405 GCRVIRICCCDEGVCRR 421


>U29377-10|AAA68717.1|  140|Caenorhabditis elegans Hypothetical
           protein K05F1.10 protein.
          Length = 140

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 99  HGCRYFGICLCSNGSCRRDNGIC 167
           H   YF  C+C++G  R + GIC
Sbjct: 87  HAKCYFPRCVCNDGYVRSEKGIC 109


>U13019-10|AAC24442.1|  757|Caenorhabditis elegans Hypothetical
           protein T12A2.2 protein.
          Length = 757

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 95  STWVSIFWDLLMQQR*LPEG*WDMLKQV 178
           +TWVS F+DL +     P G W  +K+V
Sbjct: 357 TTWVSFFFDLHITAAVFPVGLWYCIKKV 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,988,161
Number of Sequences: 27780
Number of extensions: 248032
Number of successful extensions: 561
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)