Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J07
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 319 YNGRKFMPAGLMFCLSVGMIAKLLVNNVGS 408
           YNG + +P G+   L   ++  L  N +GS
Sbjct: 294 YNGLRDLPKGIFTRLEQLLVLNLAGNRLGS 323


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 35  NSVTYSDRKSKELTTAIEYNSTWVSI 112
           NS T        +  + +YN+TWV I
Sbjct: 177 NSTTGKRNVVTPIVQSFDYNNTWVYI 202


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 334 TFFHYSICIPLNLPMY 287
           T F +S CIP+ L +Y
Sbjct: 214 TIFTFSYCIPMILIIY 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,799
Number of Sequences: 438
Number of extensions: 3329
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)