Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_J06
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 29 2.0
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 29 2.0
07_03_1448 - 26593041-26593266,26593417-26593442,26593906-265939... 28 3.4
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 28 4.5
09_04_0047 - 14139706-14140140,14140234-14140636,14141028-141412... 27 7.9
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 27 7.9
>03_02_0901 +
12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 259 DTLKYWDIGSAFLIGGNAKVYEGSGWVHVSVPTHAYNRKALR 384
+ ++Y+D L+GG E +G++ S+ H ++RK L+
Sbjct: 754 ELVEYFDPCHPILVGGIGLGEENTGYMQASLKRHRWHRKVLK 795
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 258 HMVILDASNSSGARIVRQALWS 193
HM ILD N G ++R+A WS
Sbjct: 2841 HMAILDEVNEYGENVLRRAFWS 2862
>07_03_1448 -
26593041-26593266,26593417-26593442,26593906-26593990,
26594098-26594229,26594307-26594450,26594524-26594582,
26594651-26594957,26595482-26595563,26595640-26595773,
26595858-26595951,26596022-26596145,26596407-26596466
Length = 490
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 156 VQIFHVNWSQAV-PIIFANNTAVRVNLCKVYDKQDINKTKKHIHPTNSYITS 4
VQ+ H N+ QAV II + +TA+ + L D++K + PT +++ +
Sbjct: 420 VQLIHTNYLQAVSKIIASKSTAISITLQGKSSTDDLSK----LQPTQAHVVN 467
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 76 AKVNADCGIVSKDDW-DGLTPVHVEYL 153
A + DC I+S+ +W D LT + V YL
Sbjct: 530 ANLGMDCAIISEGEWADTLTDISVGYL 556
>09_04_0047 -
14139706-14140140,14140234-14140636,14141028-14141272,
14141341-14141576,14141651-14141939
Length = 535
Score = 27.1 bits (57), Expect = 7.9
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = +1
Query: 91 DCGIVSKDDWDGLTPVHVEYLNRPVKLVIIQHTDTPQ-CLTNDACAARVRSIQDYHMDTL 267
D +S D L P +V + KL + + P+ CLT+ A S + H T
Sbjct: 73 DMPSLSHDIVGRLMPHYVLWSGTYGKLFVYLYGSEPRLCLTDTALIKEFLSSKYAHA-TG 131
Query: 268 KYW--DIGSAFLIGGNAKVYEGSGWVH 342
K W G+ IGG + G+ W H
Sbjct: 132 KSWLQRQGTKHFIGGGLLMANGARWAH 158
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 156 VQIFHVNWS-QAVPIIFANNTAVRVNLCKVYDKQDINK 46
V F+ W+ V I FA TA+ + C VY K+++ K
Sbjct: 163 VFFFYTQWTFLLVTIYFAFATAISAHGCWVYSKKNLKK 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,217,388
Number of Sequences: 37544
Number of extensions: 315747
Number of successful extensions: 670
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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