Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_J06
(483 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical pr... 31 0.33
Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical p... 30 0.77
AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase... 30 0.77
AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical... 29 1.8
Z67882-6|CAA91804.1| 406|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z50797-10|CAA90677.1| 406|Caenorhabditis elegans Hypothetical p... 27 5.4
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 27 7.1
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 27 7.1
AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pomb... 27 7.1
AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pomb... 27 7.1
Z92807-5|CAB07265.1| 480|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL021482-5|CAA16342.1| 480|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical
protein T16G1.1 protein.
Length = 695
Score = 31.5 bits (68), Expect = 0.33
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 441 MRRLFCCWLVGVVISYNRDSKSFPVVRVSGHANVH-PTGSFIY 316
M+R+F CWL +S +K F + +H P+G+ +Y
Sbjct: 1 MQRIFLCWLAIATVSQTVSAKKFMKIFADAGIGIHCPSGNKVY 43
>Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical
protein T04A11.6 protein.
Length = 988
Score = 30.3 bits (65), Expect = 0.77
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 61 FIVNFAKVNADCGIVSKDDWDGLTPVHVEYLNRPVKLVIIQHTDTPQCLTNDACAARVRS 240
F+++ A + G + D+ L+ + +Y N PV ++ + T TP+ +T+ ++++
Sbjct: 372 FVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQN 431
Query: 241 ----IQDYHMDTLKY 273
I + D LKY
Sbjct: 432 SKLFISSFVRDNLKY 446
>AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase
protein.
Length = 988
Score = 30.3 bits (65), Expect = 0.77
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 61 FIVNFAKVNADCGIVSKDDWDGLTPVHVEYLNRPVKLVIIQHTDTPQCLTNDACAARVRS 240
F+++ A + G + D+ L+ + +Y N PV ++ + T TP+ +T+ ++++
Sbjct: 372 FVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQN 431
Query: 241 ----IQDYHMDTLKY 273
I + D LKY
Sbjct: 432 SKLFISSFVRDNLKY 446
>AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical
protein Y73B6BL.43 protein.
Length = 186
Score = 29.1 bits (62), Expect = 1.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 178 IQHTDTPQCLTNDACAARVRSIQDYHMD 261
+QH+ P+ + +AC+ +SI YH++
Sbjct: 60 VQHSRMPRHMEQEACSLAAKSIMTYHLE 87
>Z67882-6|CAA91804.1| 406|Caenorhabditis elegans Hypothetical
protein F22E10.5 protein.
Length = 406
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 262 TLKYWDIGSAFLIGGNAKVYEGSGWVHV 345
TLKY+ +GS+FL+ +Y+ G+VHV
Sbjct: 225 TLKYFVVGSSFLV----SLYQIHGYVHV 248
>Z50797-10|CAA90677.1| 406|Caenorhabditis elegans Hypothetical
protein F22E10.5 protein.
Length = 406
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 262 TLKYWDIGSAFLIGGNAKVYEGSGWVHV 345
TLKY+ +GS+FL+ +Y+ G+VHV
Sbjct: 225 TLKYFVVGSSFLV----SLYQIHGYVHV 248
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 34 MLLCFVYILFIVNFAKVNADCGIVSK 111
ML+CF++IL I A A+C V +
Sbjct: 1 MLICFIFILLIPESATCPAECVCVDR 26
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 34 MLLCFVYILFIVNFAKVNADCGIVSK 111
ML+CF++IL I A A+C V +
Sbjct: 1 MLICFIFILLIPESATCPAECVCVDR 26
>AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform b protein.
Length = 684
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 139 HVEYLNRPVKLVIIQHTDTPQ 201
HVE L P K VI++H +PQ
Sbjct: 164 HVELLKSPKKPVIVEHHKSPQ 184
>AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform a protein.
Length = 741
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 139 HVEYLNRPVKLVIIQHTDTPQ 201
HVE L P K VI++H +PQ
Sbjct: 164 HVELLKSPKKPVIVEHHKSPQ 184
>Z92807-5|CAB07265.1| 480|Caenorhabditis elegans Hypothetical
protein K11D9.3 protein.
Length = 480
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 32 ICFFVLFISCLS*TLQRLTRTAVLLAKMIGTA*LQFTWN 148
ICF +L T T A L+ +IGT +++TW+
Sbjct: 346 ICFLILTFM----TFNGYTGLAFLIVNLIGTVFIEYTWD 380
>AL021482-5|CAA16342.1| 480|Caenorhabditis elegans Hypothetical
protein K11D9.3 protein.
Length = 480
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 32 ICFFVLFISCLS*TLQRLTRTAVLLAKMIGTA*LQFTWN 148
ICF +L T T A L+ +IGT +++TW+
Sbjct: 346 ICFLILTFM----TFNGYTGLAFLIVNLIGTVFIEYTWD 380
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,138,285
Number of Sequences: 27780
Number of extensions: 266681
Number of successful extensions: 657
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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