Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_J04
(456 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 35 0.005
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 29 0.45
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 25 4.2
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 4.2
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 4.2
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 7.3
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 24 9.6
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 24 9.6
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy... 24 9.6
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 24 9.6
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 35.1 bits (77), Expect = 0.005
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 179 LQKRERLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKS 295
+Q LE + V PYFP +K E+WW I D K+
Sbjct: 2075 VQLTRELEEDEEVDTTVIAPYFPAQKTEHWWLVISDDKT 2113
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 354 QLRFTAPRWPGL-YTLACCLRSDSYIGMDQQARYE 455
++ F P L Y L+C SDSY+G+D + +E
Sbjct: 2129 KMEFVPPAMGTLKYKLSCF--SDSYMGVDYEKEFE 2161
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 28.7 bits (61), Expect = 0.45
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 170 QKRLQKRERLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLL 307
+K Q ++ + G ++ PYF Q + WW Y+ D + + ++
Sbjct: 452 EKYHQSKDVVLGDVETLPYAWAPYFTQHHKTAWWIYVVDPRQNRVI 497
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 4.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 410 ETTGQGVKAGPARRREAQLQLVRVDERGD 324
ET +G K P+R L L VD++GD
Sbjct: 698 ETLVEGRKLSPSREFRIPLLLTAVDDQGD 726
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/78 (19%), Positives = 33/78 (42%)
Frame = +2
Query: 71 SDELVSHSSASEDESRDKSSAVEXXXXXQWDKFQKRLQKRERLEGRSKSSHPVHCPYFPQ 250
SDE +S+ +A ++ + S +E ++ ++ E +++ V
Sbjct: 371 SDEKLSNYAAEKENLVSRISELEHTIEQLTINNERDNERMSPAEFELETTQEVEENDSDS 430
Query: 251 EKQEYWWCYICDRKSHTL 304
E WC +C+ +H+L
Sbjct: 431 HDDEETWCEVCETNNHSL 448
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 4.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 302 ACATCDRICNTTSTLASPAGNRDNVRDENF*NG 204
AC I NT + +P GN +R+E NG
Sbjct: 817 ACQPSTSISNTRLAIQTPTGNIVRLREERSGNG 849
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +2
Query: 155 QWDKFQKRLQKRERLEGRSKSSHP-VHCP---YFPQE 253
+W +QKR++ ++ L SK+ H + P YFP++
Sbjct: 132 EWKAWQKRMRYKKNLTKISKNHHSIIRTPKKSYFPKD 168
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 12 RKLKNQRKKMTNVRIRTSVAQTS*CHIVPHQK 107
R K+ + + T VRI +A C I+PH K
Sbjct: 537 RSKKSWQARHTGVRIIQQIALLLGCSILPHLK 568
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +2
Query: 62 VGSSDELVSHSSASEDESRDKSSAVEXXXXXQWDKFQKRLQKRERLEGRSKSSHPV 229
+ + L + +++ E K S V Q+D ++L++ + L R S +PV
Sbjct: 10 ISALQALQASVASAYSEVPGKRSVVLNLQHSQYDHVARKLERTKVLNKRDSSGYPV 65
>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 24.2 bits (50), Expect = 9.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 432 YRCTSLI*DNRPR 394
Y CTS++ DN+PR
Sbjct: 237 YTCTSILPDNKPR 249
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 24.2 bits (50), Expect = 9.6
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 56 SDVGSSDELVSHSSASEDESRDKSSAVEXXX--XXQWDKFQK 175
SD+ + SHS+ DE++ K S+ E + DKF K
Sbjct: 268 SDLYNDSNSGSHSNDDSDETKLKQSSTESSSELLDEKDKFDK 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,240,977
Number of Sequences: 5004
Number of extensions: 16847
Number of successful extensions: 77
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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