Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_J04
(456 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 40 0.001
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 36 0.020
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 30 0.77
02_01_0067 + 487231-487530,487580-487675,487716-487862 30 0.77
12_01_0948 + 9434012-9434359 29 2.3
03_05_0809 - 27858389-27858604,27858630-27858659 28 4.1
10_01_0273 - 2891910-2893459,2893554-2893665 27 9.5
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 27 9.5
02_01_0035 - 220036-221419,222050-222801 27 9.5
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 185 KRERLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLL 307
+RE + + PVH P FP+ K+E WW I DR + LL
Sbjct: 2048 EREMADLLQSEAGPVHAPRFPKPKEEGWWLVIGDRSTDQLL 2088
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 351 LQLRFTAPRWPGLYTLACCLRSDSYIGMDQQARY 452
++L F AP G L SDSY+G DQ+ +
Sbjct: 2101 VKLEFAAPAEAGRKDYMVYLMSDSYLGCDQEYEF 2134
>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 35.5 bits (78), Expect = 0.020
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 224 PVHCPYFPQEKQEYWWCYICDRKSHTLL 307
PVH P +P+ K+E WW I D ++ LL
Sbjct: 2094 PVHAPRYPKPKEEGWWLVIGDSSTNQLL 2121
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 330 ALVDAHELQLRFTAPRWPGLYTLACCLRSDSYIGMDQQARY 452
AL ++L FTA G L SDSY+G DQ+ +
Sbjct: 2127 ALQKRARVKLEFTAASEAGRKEYMIYLMSDSYLGCDQEYEF 2167
>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 30.3 bits (65), Expect = 0.77
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 161 DKFQKR---LQKRERLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTL 304
DK Q R L R +++ +S+ P FP+ KQE WW + + +S L
Sbjct: 1878 DKDQSRPPILSIRLQMKDARRSTSRAFSPRFPKAKQEAWWLVLGNIRSSEL 1928
>02_01_0067 + 487231-487530,487580-487675,487716-487862
Length = 180
Score = 30.3 bits (65), Expect = 0.77
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 224 PVHCPYFPQEKQEYWW 271
PVH P +P+ K+E WW
Sbjct: 116 PVHAPRYPKPKEEGWW 131
>12_01_0948 + 9434012-9434359
Length = 115
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 374 RRREAQLQLVRVDERGDGARAPSAACATCDRICNTTSTLASPAGNR 237
RR E E DG P A C CD+I +T ++ A+ NR
Sbjct: 50 RRAECWRHFEVFTEMVDGKSIPHAQCKYCDKILSTATSSATCHLNR 95
>03_05_0809 - 27858389-27858604,27858630-27858659
Length = 81
Score = 27.9 bits (59), Expect = 4.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 344 RVDERGDGARAPSAACATCDRICNTT 267
R + + G +A AC+ CD++CN++
Sbjct: 16 RAEAQAAGPQAAPMACSQCDQMCNSS 41
>10_01_0273 - 2891910-2893459,2893554-2893665
Length = 553
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 204 AVLKVLIPYIVPISRRRSKSTGGVT--YAIASXXXXXXXXXXXXALVDAHELQL 359
AVL V +VP++RR + GG+T I + ALV+A L++
Sbjct: 366 AVLPVYDRMVVPLARRLTGGGGGITMLQRIGAGMATGCLAMAVAALVEARRLRV 419
>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 111 SPGTSRQPSKXXXXXNGTSFRRGCRNVNGSRAVLKVLIPYIVPISRRRSKS 263
SP + + + S G + G +L P +VPISRR S+S
Sbjct: 901 SPSSMQDSPEDKTISVSKSVSCGSEVIKGDTLPYAMLRPIVVPISRRPSRS 951
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 155 QWDKFQKRLQKRERLEGRSKSSHPVHCPYFPQEKQEY 265
+W+ K +K + G+ + +H CPYF + + Y
Sbjct: 577 KWENINKYFRKAKE-SGKKRPAHAKTCPYFDELDRLY 612
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,669,655
Number of Sequences: 37544
Number of extensions: 131024
Number of successful extensions: 593
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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