Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_I24
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961... 32 0.31
10_06_0155 + 11306808-11306956,11307157-11307418,11307496-113076... 30 1.6
11_02_0033 + 7574845-7575004,7575370-7575429,7575582-7575623,757... 29 2.9
02_05_0687 - 30909791-30910293,30910440-30910503 29 2.9
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 29 2.9
10_08_0331 - 16831646-16834756 29 3.8
08_01_1084 - 11120719-11120950,11121035-11121133,11122446-111228... 28 6.6
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 27 8.7
03_06_0397 - 33624883-33625484,33625569-33625632,33625663-336257... 27 8.7
>09_02_0469 -
9610883-9611338,9611749-9611871,9612199-9612375,
9614416-9614501,9615519-9615678,9616122-9617438,
9619463-9620428,9621452-9621766
Length = 1199
Score = 32.3 bits (70), Expect = 0.31
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Frame = +2
Query: 71 CPKLNRW*IKHEMYNIYQNNLAPPPEVTP-PQKVVRFDKDYFSKLPGILQLVQLMCNII- 244
C KL R H +++++ NL+ PEVT P+ + K F L G +L L +
Sbjct: 599 CQKLQRLNSLHLLHDLHYLNLSCCPEVTSFPESLENLTKLRFLNLSGCSKLSALPIRFLE 658
Query: 245 --GFICIKVSWSFVSAIFYNILYWFGNIITL-FLFLS 346
+C V + F + +FGNI +L +L LS
Sbjct: 659 SFASLCSLVDLNLSGFEFQMLPDFFGNIYSLQYLNLS 695
>10_06_0155 +
11306808-11306956,11307157-11307418,11307496-11307697,
11308118-11308353
Length = 282
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 603 CPVHIEERGHCGGRPRFHALYFK*PSKPYAISAHK 499
CP+H+ + GHC G A + + PS + HK
Sbjct: 197 CPLHVHDNGHCFG-CSVRAKFLRHPSSHVFLGGHK 230
>11_02_0033 +
7574845-7575004,7575370-7575429,7575582-7575623,
7576192-7576363,7577881-7577991,7578042-7578132
Length = 211
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 449 FATVIGESVGYAVGFFGLCALIAYGFDGYLKYKAWKRGL 565
F +G VG VGFFG + +A G G ++ + RG+
Sbjct: 37 FGLGVGCGVGAGVGFFGEISKLASGCSGIIRSLGFIRGI 75
>02_05_0687 - 30909791-30910293,30910440-30910503
Length = 188
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 73 TTYRYTNSNTGVNCSNSPKTY 11
+TYRYT+ TG SN+P+ Y
Sbjct: 12 STYRYTDRYTGFEMSNTPEDY 32
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = -1
Query: 539 SNSRRNRTLLARTNQRTQQHTRHFHR*LSQI*STQYT---RATLSRKRTVRICSRASGRT 369
S SR + +R+ +R+++H+R R S+ S YT RA+ SR R+ SR R+
Sbjct: 598 SRSRSDSDRYSRSPKRSRRHSRSRTRSRSRSRSRSYTRNRRASRSRSRSPG-ASRRHERS 656
Query: 368 SRPSGTCTRETG 333
+ SG+ ++G
Sbjct: 657 ATGSGSALPDSG 668
>10_08_0331 - 16831646-16834756
Length = 1036
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 269 WSFVSAIFYNILYWFGNIITLFLFLSYTFHLVEKYDR 379
+S V I + WFG +I L + FH V+ +R
Sbjct: 990 YSLVVGIVFGFWLWFGALILLKPLRDFVFHFVDHIER 1026
>08_01_1084 -
11120719-11120950,11121035-11121133,11122446-11122849,
11123559-11124197
Length = 457
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = -3
Query: 486 TAYPTLSPITVANIEHTIYASDIITQKNSSYLFQGQRSYFSTKWNVYERNRNSVMILPNQ 307
T YP S N ++Y + + N LF + S WN+++ NS+ P
Sbjct: 239 TDYPIFSLCQAPNSPSSLY----LAEGNDLKLFDERMGKVSATWNLHDNRINSIDFHPEN 294
Query: 306 YNML 295
ML
Sbjct: 295 TYML 298
>12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/77 (18%), Positives = 36/77 (46%)
Frame = -3
Query: 510 SAHKPKNPTAYPTLSPITVANIEHTIYASDIITQKNSSYLFQGQRSYFSTKWNVYERNRN 331
S HK T T +++ + T+++SD+ + ++L G ++ + +
Sbjct: 828 SLHKSPTTTTTRTRGKSVMSHRDATLFSSDVASLAAPNFLLDGVINFVMAHMTTELGDES 887
Query: 330 SVMILPNQYNML*NIAD 280
+++ P+ ++L N+ D
Sbjct: 888 LLLVSPSVASLLANLQD 904
>03_06_0397 -
33624883-33625484,33625569-33625632,33625663-33625744,
33626081-33626649
Length = 438
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 224 QLMC-NIIGFICIKVSWSFVSAIFYNILYWFGNIITLFL 337
++MC F+ I SW ++ I ++ YW +TLFL
Sbjct: 279 RIMCAQFSAFMGIPFSWILLTVIPQSVDYWSAFAVTLFL 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,353,765
Number of Sequences: 37544
Number of extensions: 374581
Number of successful extensions: 1090
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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