Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I24
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.4  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 411 QKNSSYLFQGQRSYFSTKWNVYERNRN 331
           +K+ SY  +G RSY   +  + + N N
Sbjct: 14  KKDESYFDEGGRSYGKGRGFIIQNNNN 40


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 481 IPDTFTDNCRKYRAHNIRERH 419
           +PDTF  N +    H++ ER+
Sbjct: 118 VPDTFFANDKNSFLHDVTERN 138


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 248 FICIKVSWSFVSAIFYN 298
           F CI +SW+F    FY+
Sbjct: 461 FECIAISWAFGVNRFYD 477


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 248 FICIKVSWSFVSAIFYN 298
           F CI +SW+F    FY+
Sbjct: 514 FECIAISWAFGVNRFYD 530


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 329 LFLFLSYTFHLVEKYDRWPW 388
           LFL L   F L   + ++PW
Sbjct: 81  LFLILGLPFELSVFWQQYPW 100


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 278 VSAIFYNILYW 310
           V+ I +NILYW
Sbjct: 454 VAFIIFNILYW 464


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 572 AEAGLASTLCISNSRRNRTLLARTNQRTQQHTRH 471
           AE G AST+ + +  R  T   +T +     T H
Sbjct: 20  AEHGYASTMPMPDDMRTVTKRPKTKKSQGSRTTH 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,638
Number of Sequences: 438
Number of extensions: 4528
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)