Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I22
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   3.9  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   5.1  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   6.7  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    25   6.7  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    24   8.9  
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    24   8.9  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    24   8.9  

>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 289 DEHCHVTEIDPKKP 330
           D H HV E+ PK+P
Sbjct: 210 DRHLHVAEVPPKRP 223


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 168 YVAAFLMCQFLWFLRQGPYPYRSVNGTNNH 79
           YV   + C + W L + P+  RS   TN++
Sbjct: 338 YVQRLVRCDYTWHLCKSPFK-RSTGNTNDN 366


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 141 FLWFLRQGPYP 109
           FLW LRQG YP
Sbjct: 269 FLWDLRQGQYP 279


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +1

Query: 58  SKILIISMIVCTVNAAVWIGALPKKPKELAHKEGCYIKEINDVVPCGTELKPIGHCYR 231
           S+ L +  +   +N+  +I  LP++ KE  H E   + EI   +P       I  CY+
Sbjct: 190 SRCLTVEELHTLMNSFSFIYKLPEEEKEKVHAE---LDEIAKTIPRVQNTDQIKLCYQ 244


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
 Frame = +1

Query: 91  TVNAAVWIGALPKK----PKE-LAHKEGCYIKEINDVVPCGTELKPIGHCYRITCGGSMI 255
           T+ A VW G L  K    PK  + H +   +K     +  G++             G+++
Sbjct: 36  TMKACVWDGPLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGAIL 95

Query: 256 DYASCGVVATNDEHCHVTEI 315
            + SCG+VA   +  +  EI
Sbjct: 96  GHESCGIVAEKGDEVNNLEI 115


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 312 LCDVAMFVICSDNTTRSVINHASSTGN 232
           LCD A  V+C +N  + V N  +  G+
Sbjct: 44  LCDKAREVLCQENNVQPVRNPVTVCGD 70


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 134 GFLGKAPIHTAALTVQTI 81
           G + +AP+HTAAL V+ +
Sbjct: 336 GLIPQAPMHTAALCVKRV 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,964
Number of Sequences: 5004
Number of extensions: 39767
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)