Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I22
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545...    29   2.2  
07_01_0896 - 7508341-7508715,7511746-7511886                           27   5.0  
03_06_0636 - 35215034-35215336,35215417-35215584,35215599-352157...    27   6.6  

>02_05_0941 + 32953065-32953089,32954252-32954406,32954486-32954587,
            32955089-32955140,32955237-32955349,32955542-32955610,
            32955942-32956049,32956517-32956661,32957245-32957476,
            32957567-32957853,32957951-32958087,32958520-32958667,
            32959464-32959595,32960239-32960367,32960707-32960834,
            32960911-32961075,32961462-32961587,32962088-32962161,
            32962285-32962534,32962875-32963054,32963128-32963361,
            32964771-32964840,32965065-32965177,32965403-32965511,
            32965639-32965688,32965823-32965889,32966131-32966203,
            32966393-32966448,32966729-32966831,32967377-32967458,
            32967717-32967779,32967918-32967977,32968356-32968448,
            32968561-32968623,32968699-32968797
          Length = 1363

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 188  TTSLISFM*QPSLCANSFGFLGKAPIHTAALTVQTIMD 75
            T  + SF+  P+LCA   G +   P+  AA  ++T+ +
Sbjct: 967  TRDVGSFLDHPTLCARCHGVIDLPPVPAAAAGIETLRE 1004


>07_01_0896 - 7508341-7508715,7511746-7511886
          Length = 171

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 374 SFSESHLISGQHSGYGFLGSISVTW 300
           +F  S L  GQH+ YGF+   + TW
Sbjct: 31  AFGSSILTMGQHTEYGFVPVANPTW 55


>03_06_0636 -
           35215034-35215336,35215417-35215584,35215599-35215799,
           35215877-35215962,35216037-35216229,35216304-35216489
          Length = 378

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 273 TTRSVINHASSTGNSVA-MSDGLEFC-STRYHIIDFF 169
           T  SVI H SST NS A  S+  E C + +  +IDF+
Sbjct: 196 TLYSVITHLSSTQNSPASSSESSENCHAAKAAVIDFY 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,957,914
Number of Sequences: 37544
Number of extensions: 259656
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)