Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_I20
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0991 - 21500143-21500799,21500834-21501172 30 0.68
11_06_0181 + 20985960-20987825,20987904-20989169 29 1.2
08_01_0095 + 686182-686184,686440-686682,686755-687228 29 2.1
06_03_0629 + 22920206-22920291,22920430-22920527,22920657-229207... 27 4.8
03_06_0120 + 31804301-31804412,31804525-31804631,31804714-318047... 27 4.8
12_01_0490 + 3878436-3878466,3878559-3879113,3879218-3879777,388... 27 8.3
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 27 8.3
02_05_0435 - 28958422-28958665,28959328-28959462,28960056-289602... 27 8.3
02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890... 27 8.3
>04_03_0991 - 21500143-21500799,21500834-21501172
Length = 331
Score = 30.3 bits (65), Expect = 0.68
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 147 TRVNQETESHFVVSGLSAWAILSTLSFGAAEETFDEINTVLRLHPHVCFNRKYFNILKEI 326
T V ++ H + GL A + ++F + +TF VL V F + F KE+
Sbjct: 154 TVVVPPSDLHRHLGGLLATGEGADVTFEVSGKTFAAHRLVLAARSPV-FRAELFGPSKEL 212
Query: 327 GKNDGGVLEHSGAMFIDSKINVYE 398
G GG ++H+ D + +E
Sbjct: 213 GATTGGAVDHTAIRIDDMEARDFE 236
>11_06_0181 + 20985960-20987825,20987904-20989169
Length = 1043
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -1
Query: 424 VFWTSCLNCS*TFIFESMNIAPECSKTPPSFLPI 323
VFWT C +C F++ N CS F I
Sbjct: 167 VFWTICPHCQKRFLYYQRNFLARCSDCGKRFFAI 200
>08_01_0095 + 686182-686184,686440-686682,686755-687228
Length = 239
Score = 28.7 bits (61), Expect = 2.1
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +3
Query: 72 YGKCNDYTAHQFLKRSLYDFNAGLVTRVNQETESHFVVSGL-SAWAILSTLSFGAAEETF 248
Y YT QF L D A +TR+ + FVV+G+ S I + L+
Sbjct: 58 YNTRRRYTPRQFADL-LADRYAAQLTRLYKAGARKFVVAGVGSMGCIPNVLAQSVESRCS 116
Query: 249 DEINTVLRLHPHVCFNRKYFNILKEIGKNDGGVLEHSGAMFIDS 380
E++ ++ V FN N+ +G+ DGG L + +F+D+
Sbjct: 117 PEVDALV-----VPFNA---NVRAMLGRLDGGGLPGASLVFLDN 152
>06_03_0629 +
22920206-22920291,22920430-22920527,22920657-22920796,
22921596-22921626,22922025-22922128,22922439-22922560,
22922651-22923050,22923245-22923268
Length = 334
Score = 27.5 bits (58), Expect = 4.8
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 122 VRLQRWTSDESQSRNGKPFRRIWTISMGNSI 214
+ ++ W+S S S P R+ W +S+ N++
Sbjct: 61 IMIKLWSSGGSSSAGRAPLRKYWGVSITNTV 91
>03_06_0120 +
31804301-31804412,31804525-31804631,31804714-31804756,
31806069-31806187
Length = 126
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 271 LSTVLISSKVSSA-APNDSVDRIAHADSPDTTKWLSVS*LTLVTSPALKSYN 119
L ++ +K ++A A + AH D+ +T KW ++ +VT L +YN
Sbjct: 10 LRSLAARAKATAAPAARRRMSSSAHDDAHETAKWEKITYAGIVTCTLLAAYN 61
>12_01_0490 +
3878436-3878466,3878559-3879113,3879218-3879777,
3880660-3880965,3881071-3881202,3881623-3881756,
3881939-3882015,3882084-3882226,3883376-3883633,
3884085-3884111
Length = 740
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 138 GLVTRVNQETESHFVVSGLSAWAILSTLSFGAAEETFDEINTVLRLHP 281
GLVT + + +V L AW I++ L+ G+ + T++R P
Sbjct: 253 GLVTSTPELYDLSRIVRFLDAWGIINYLAAGSVQRGLRMAATLIREEP 300
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 26.6 bits (56), Expect = 8.3
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = +3
Query: 66 NAYGKCNDYTAHQFLKRSLYDFNAGLVTRVNQETESHFVVSGLSAWAILSTLSFGAAEET 245
N+ G C+D + Q + D N G+ + ++ E H + GLSA A + L E
Sbjct: 578 NSEGICSD-SRGQGPHPNFRDHNGGVSSSISPEKVKHAAMCGLSAAATKAKLFADQEERE 636
Query: 246 FDEINTVLRLHPHV 287
+ + H V
Sbjct: 637 IQRLTATVINHQGV 650
>02_05_0435 - 28958422-28958665,28959328-28959462,28960056-28960211,
28960287-28961092,28961177-28961254,28961809-28961883,
28962127-28962215,28962735-28962843,28963007-28963086,
28963739-28963794,28963876-28963958,28964049-28964118,
28964200-28964309,28964395-28964548,28965183-28965382,
28966175-28966348,28969080-28969277,28970564-28970791
Length = 1014
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 155 QSRNGKPFRRIWTISMGNSIDAIVWRCRRNF 247
QSR+G+PF+R S+ S V+ CR+ F
Sbjct: 925 QSRHGQPFQRRKAWSLFYSRRTAVFLCRKGF 955
>02_04_0203 -
20888010-20888162,20888242-20888469,20888969-20889073,
20889148-20889225,20889308-20889382,20890037-20890123,
20890216-20890283,20890396-20890483,20890583-20890683,
20890793-20890913,20891008-20891169,20891271-20891441
Length = 478
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 291 FNRKYFNILKEIGKNDGGVLEHSGAMFIDSKINVY-EQFKQD 413
F+ YF +KE D VL A+F D VY E++ +D
Sbjct: 285 FDNSYFKDIKEQRDQDLLVLPTDAALFEDPSFKVYAEKYAED 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,934,597
Number of Sequences: 37544
Number of extensions: 178422
Number of successful extensions: 441
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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