Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I20
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical p...    29   1.4  
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    28   3.2  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    28   3.2  
Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical p...    27   5.6  
U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear fa...    27   5.6  
U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear fa...    27   5.6  
U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear fa...    27   5.6  
Z81054-9|CAB02883.2|  540|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z30215-5|CAA82938.1|  199|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical
           protein T08G3.12 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = -1

Query: 349 KTPPSFLPISFKILKYFLLKHTCGCSLSTVLISSKVSSAAPNDSVDRIAHADSPDTTKWL 170
           KTP +  P+ F IL   +       +LST+ I   + SAA   S   +A+   P + ++ 
Sbjct: 40  KTPKTLQPVKFSILVMHITCFWLDFNLSTLSIPYLIYSAAAGQSFGILAYLKIPMSFQFY 99

Query: 169 SVS*LTLVTSPAL 131
             +    +  PA+
Sbjct: 100 MGATAVFLLGPAI 112


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
           related protein 2 protein.
          Length = 1272

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 234 AEETFDEINTVLRLHPHVCFNRKYFNILKEIGKNDG 341
           AEETF  I TV  L+ H     +++N L E+G+  G
Sbjct: 260 AEETFSSIRTVHSLNGHKRELDRFYNAL-EVGRQTG 294


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
           PGP-2 protein.
          Length = 1272

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 234 AEETFDEINTVLRLHPHVCFNRKYFNILKEIGKNDG 341
           AEETF  I TV  L+ H     +++N L E+G+  G
Sbjct: 260 AEETFSSIRTVHSLNGHKRELDRFYNAL-EVGRQTG 294


>Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical
           protein ZK856.12 protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 271 LSTVLISSKVSSAAPNDSVDRIAHADSPDTTK 176
           +S+V   S     APNDSV+ +A  D  +T K
Sbjct: 614 ISSVAQGSNAPKTAPNDSVNSVAPDDIHETDK 645


>U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform b protein.
          Length = 787

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 270 RLHPHVCFNRKYFNILKEIGKNDGGV 347
           R+HPH   + ++ N  +E+ KN+G +
Sbjct: 491 RMHPHTSNSFEFLNCNQEMNKNEGAL 516


>U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform a protein.
          Length = 807

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 270 RLHPHVCFNRKYFNILKEIGKNDGGV 347
           R+HPH   + ++ N  +E+ KN+G +
Sbjct: 511 RMHPHTSNSFEFLNCNQEMNKNEGAL 536


>U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform c protein.
          Length = 823

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 270 RLHPHVCFNRKYFNILKEIGKNDGGV 347
           R+HPH   + ++ N  +E+ KN+G +
Sbjct: 527 RMHPHTSNSFEFLNCNQEMNKNEGAL 552


>Z81054-9|CAB02883.2|  540|Caenorhabditis elegans Hypothetical
           protein F01D4.1 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 207 ILSTLSFGAAEETFDEINTVLRLHPHVCFN--RKYFNILKEIGKNDG 341
           ILS L+  +  E   ++ T+LR HP        KYFN +   GK  G
Sbjct: 445 ILSVLNDPSYAERAQQLATLLRNHPESPKQVFLKYFNFVARFGKPTG 491


>Z30215-5|CAA82938.1|  199|Caenorhabditis elegans Hypothetical
           protein F40F12.7 protein.
          Length = 199

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 66  NAYGKCNDYTAHQFLKRSLYDFNAGLVTRVNQETESH 176
           N+YG  +    HQ    ++     G  +R NQETE++
Sbjct: 126 NSYGSADGEVIHQIGSSAMSVGEGGHQSRTNQETETN 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,858,377
Number of Sequences: 27780
Number of extensions: 167752
Number of successful extensions: 429
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)