Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I19
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    27   1.6  
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...    26   3.7  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   4.8  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    25   4.8  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.4  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.4  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   8.4  

>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 392 YYNIFLIQWFLPII--ILKKKTINLSPMPTIETIIY 291
           Y N   +  +LP +  +++ + +NL  MP IET+ Y
Sbjct: 314 YINTNNVWLYLPAVKRVVENRELNLDIMPNIETVYY 349


>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 437 IVKCT*PNYCLNKLYYYNIFLIQWFLPIIILKKKTINLSPMPTIETII 294
           ++  T P  C +K Y    +L   F+  +I KK  ++L P P I+ ++
Sbjct: 186 LISLTAPKPC-SKFYKGKHYLGGRFVSKVITKKFNLSLPPYPGIDQVV 232


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 125 VAWVSNNATSTSRSPQSLDVSQKGLTIMLSSYTKEYLK 12
           VA  +++  S SRSP+S+  SQ   +  + SY ++  K
Sbjct: 47  VADTNSSVPSASRSPESIASSQSNDSAAIPSYRRKRRK 84


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -2

Query: 359 PIIILKKKTINLSPMPTIETIIY*MKQKKKNHILNLRLPR 240
           P+I+L+ KTI  S    +E +   ++ +++ ++L  + PR
Sbjct: 56  PLIVLRNKTIRNSIEVLVEEMFRDIQMRQQTNVLVAQCPR 95


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 413 YCLNKLYYYNIFLIQWFLPII 351
           Y +   YY+   L++WF PII
Sbjct: 475 YNIEIAYYFTDVLLKWFQPII 495


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 270 FFLLFHLIYNSFNSWHGGEIYSFFF 344
           FFLL+H I  S + +H   + SF F
Sbjct: 157 FFLLYHQIILSHSLFHISHLISFHF 181


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 116 VSNNATSTSRSPQSLDVSQ 60
           VS    STS+SP SLDV Q
Sbjct: 157 VSGGNGSTSQSPPSLDVEQ 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,272
Number of Sequences: 5004
Number of extensions: 36277
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)