Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I18
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AL023821-2|CAA19437.2|  355|Caenorhabditis elegans Hypothetical ...    28   3.6  
U58749-3|AAK18875.1|  202|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    28   4.7  
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    27   8.2  
AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/73 (23%), Positives = 30/73 (41%)
 Frame = -1

Query: 467 CFIQINCDVASFVATS*VNAFSVATCDCVCAVRVTCWRVWCLDFLCQNHCNSFVCLKHNA 288
           C++++N  V    A +   A +   C C CA     +   C  FL      + +  K N 
Sbjct: 576 CYVELNDFVLEGTAIAVETAVTPEECKCKCAEGHKLYGEECASFLYYYDSKTCLINKQNR 635

Query: 287 ITSEVQQAFCPAI 249
            ++  +  F P+I
Sbjct: 636 FSNPEKFNFVPSI 648


>AL023821-2|CAA19437.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5B.3 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 258 TESLLNFTSDSIVLQANETVTMILTQEIQAPHAPAGDANCTNAIAGGDGKCVYL 419
           T ++ +FT  S + +   T +++    I + HAP+ + +C        GKC+ L
Sbjct: 61  TSTVTSFTKTSTISETPSTTSLV---SISSTHAPSNNLSCHIGFELIGGKCLQL 111


>U58749-3|AAK18875.1|  202|Caenorhabditis elegans Hypothetical
           protein B0496.4 protein.
          Length = 202

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 255 WTESLLNFTSDSIVLQANETVTMILTQEIQAPHAPAGDANCTNA 386
           WT   +    D +  QA   V+     E   PHA +G +N TNA
Sbjct: 26  WTRPDVTSQIDRLRSQATSVVSSPPPHEYAVPHAFSGSSNGTNA 69


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 375 CTNAIAGGDGKCVYLTRCYEARNITVDLYKTTYCIVDCGYAGVC 506
           C N +  G G C +  +C      T ++  +T+C V C    VC
Sbjct: 348 CYNTVQVG-GSCSFSQQCLNNAVCTNNICVSTFCSVSCSTNQVC 390


>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore
           complex protein protein12 protein.
          Length = 1847

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 469 VVLYKSTVMLRAS*QRVR*THFPSPPAIAFVQFASPAGACGAWISCVKIIVTV 311
           + L + T+  R +  RV   + P+ P    ++   P G C  W S    IV+V
Sbjct: 10  LALVQITISYRLNVPRVLLPYHPTVPVSFVLEVTHPTGGCFTWRSTRPDIVSV 62


>AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical
           protein C13A2.6 protein.
          Length = 537

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
 Frame = +3

Query: 141 KSIQRRPVPPVKWPSSTPLTTPVVLIPGLYTY-HLEDYSWTESLLNFTSDS--------- 290
           ++I   P PPV  PSS PL    V I   Y Y + +        LN   DS         
Sbjct: 68  ENITNSPSPPVYDPSSHPLPASHVYIVSAYYYPNSKSLGKNAVALNMVVDSKNFPVDNVV 127

Query: 291 -IVLQANETVTMILTQEIQAPHAPA 362
             V+ +NET  + L  E Q    P+
Sbjct: 128 YSVIGSNETHRIFLRAESQVEGVPS 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,821,277
Number of Sequences: 27780
Number of extensions: 240550
Number of successful extensions: 870
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)