Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I17
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    24   5.0  
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    24   5.0  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    24   6.6  
SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe...    24   6.6  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    24   6.6  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    23   8.7  

>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 314 CHSKVAYYHIKC 279
           CH ++A YHI C
Sbjct: 217 CHERIARYHILC 228


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +2

Query: 17  HPLSIRGCRKRRLR--DINQWI 76
           +PLS RGC  +R++  DI  W+
Sbjct: 165 NPLSYRGCPDQRIQIVDIELWV 186


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 188 PTVDAFTVKWMDIIIVGVYQVTPLGLVHRNHI 283
           P VD F + W ++I + ++ +    LVH   I
Sbjct: 46  PIVDFFGLSWHNLINIRLHTLNTYPLVHHGVI 77


>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 193

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +2

Query: 176 GDLYPTVDAFTVKWMDIIIVGVYQVTPLGLV 268
           G L+P + A+ +  + ++ +GVY++  +GL+
Sbjct: 135 GTLWPAMGAYILFQLLLMGIGVYKLQRMGLL 165


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 155 EFPPFVWGDLYPTVD 199
           E+PP  W ++ P+VD
Sbjct: 255 EYPPKPWSEILPSVD 269


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 140 AWRLWEFPPF 169
           +W LW +PPF
Sbjct: 514 SWYLWRYPPF 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,250
Number of Sequences: 5004
Number of extensions: 30299
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)