Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I17
         (321 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0444 - 16006619-16006733,16006754-16007048,16008265-16008967     26   5.7  
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498...    26   5.7  
03_02_0899 + 12257831-12257858,12258490-12258561,12259121-122604...    26   7.6  

>04_03_0444 - 16006619-16006733,16006754-16007048,16008265-16008967
          Length = 370

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 234 TIIISIHLTVNASTVGYK--SPQTKGGNSHNRHAW*T 130
           +I++S+ L     T GYK  +P+ + GN   R  W T
Sbjct: 260 SILVSLVLLGQGDTYGYKYKAPEEERGNHPERRPWKT 296


>01_05_0282 -
           20347915-20348874,20348968-20349012,20349568-20349816,
           20350393-20350581,20351051-20351155,20351165-20351488,
           20351493-20351555
          Length = 644

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 126 NSSTKRGDYGNSPLLF 173
           +S  K GDYG +PLLF
Sbjct: 289 DSRMKNGDYGRAPLLF 304


>03_02_0899 +
           12257831-12257858,12258490-12258561,12259121-12260413,
           12260593-12261224
          Length = 674

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 121 SLTRLPSVAIMG-IPPFCLGRLIS 189
           S  R+P+  ++G IPP  LGRL+S
Sbjct: 110 SALRVPAAGLIGAIPPNTLGRLVS 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,243,505
Number of Sequences: 37544
Number of extensions: 191045
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)