Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I16
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    27   2.9  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    26   3.8  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   6.6  

>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 68  ELENALRRDPDAKANKPA-----FEAKQAFIRQYSICKIVELCY 184
           E +  +RR  + +A++ A     FEA+  F +Q+   K V+ CY
Sbjct: 45  ERQKLVRRIKNCRASEDADTLGRFEAEFEFAKQFDFTKFVDYCY 88


>SPBC336.08 |spc24||spindle pole body protein
          Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 2  FEVGPEIINCENINDIKVQLDSELENAL 85
          F++ P++    NI DI+ Q+ S  E  L
Sbjct: 16 FQIAPDVKTISNIQDIRAQIQSFREKEL 43


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 343 NKHICIYLFKYNKNNKGHMILIGLNSDIFHDIPEEGGSW 227
           N+ + ++  K   N+ G      L SD+ H + E+ GSW
Sbjct: 320 NERLPLFAEKSETNSNGEA---SLPSDVNHGVKEDEGSW 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,755
Number of Sequences: 5004
Number of extensions: 43074
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)