Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I14
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...   103   7e-24
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr...    27   1.4  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   2.4  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    26   2.4  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   3.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   3.1  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   4.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   4.1  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    24   7.2  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    24   7.2  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    24   9.5  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    24   9.5  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score =  103 bits (248), Expect = 7e-24
 Identities = 55/120 (45%), Positives = 73/120 (60%)
 Frame = +3

Query: 15  VKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 194
           +K  ELR +                 +LRV K+ GG  SKLSKI+  RK IAR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 195 KMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFPPRVYAVKA 374
             ++  R  YKNKKY PLDLR KKTRA+R+AL+ +E   KT K+I+K+  FP R YA+KA
Sbjct: 63  SNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALKA 122


>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 184

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +3

Query: 183 VYHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSL 344
           V+   + V LR H   +  +   +    +  +    S H AK+K R+ +R   L
Sbjct: 102 VHEIPLGVPLRLHQSKQALRAKAIAESSSTKLESRKSAHNAKVKQRQRLRASGL 155


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +3

Query: 162 AIARVYIVYHQKMKVNLRYHYKNK 233
           ++ +V+I  H+K   ++R+HYK++
Sbjct: 224 SVLKVHISSHEKQVSDVRFHYKHQ 247


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 183 VYHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEI 329
           +YH ++     YH K  KY+ L +R+        +L  H A ++  K I
Sbjct: 276 MYHAQL--GREYHEKALKYRSLAMRSLAHSGTSHSLDLHGATVREAKTI 322


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +3

Query: 204  VNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSL 344
            +N  +H KN  + P D+R          +     +  T   + KKSL
Sbjct: 1134 LNFNFHSKNVNFPPADIRVISVTPKGNNMYDATVQFTTSSTMSKKSL 1180


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 249 DLRTKKTRAMRKALSKHEAKIKTRKEIRKKS 341
           D++TK  RAMR+ +   +   +  +++RKK+
Sbjct: 677 DMQTKAKRAMRETMVFWKRNERVERDLRKKA 707


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 225 KNKKYKPLDLRTKKTRAMRKALSKHEAKIKT-RKEIRK 335
           ++ +YK  DL+ +K +   K LS  EA+ K   +++R+
Sbjct: 187 RDGRYKSEDLKRRKLQPSSKPLSSLEARAKVIMRQVRR 224


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 155 QKSNRPRIHCVPPENEGKPPLP 220
           +KSN P+    PP   G P LP
Sbjct: 62  RKSNTPKSFAAPPVPTGAPSLP 83


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 203 LHFLVVHNVYAGDCFSDNTDF 141
           L+FL   + YAG   +D TDF
Sbjct: 103 LYFLWAQSTYAGGIVNDYTDF 123


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 240 KPLDLRTKKTRAMRKALSKHEAKIKTRKE 326
           KP+DLRT+  R  R  ++  + +  T  E
Sbjct: 141 KPVDLRTQHNRPQRPVVTPAKRRFNTTPE 169


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 150 VVRKAIARVYIVYHQKMKVNLRYHYK-NKKYKPLD 251
           V   A + V  V +Q  +V + YHYK N KY  LD
Sbjct: 308 VAETAPSLVVKVVNQDYEVKVFYHYKDNIKYVLLD 342


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 143 NPCCQKSNRPRIHCVPPENEGKPPLPLQE 229
           NPC    +RP  H  P +NE K  + +++
Sbjct: 206 NPCYVCYDRPPNHFTPIKNEQKKQMSIKK 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,324,127
Number of Sequences: 5004
Number of extensions: 22155
Number of successful extensions: 78
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)