Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_I14
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 97 4e-21
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 50 7e-07
12_01_0152 - 1168928-1169377 28 3.0
11_01_0155 - 1287003-1287452 28 3.0
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 27 5.3
06_01_0570 + 4026889-4027537,4028340-4028689,4029258-4029433,402... 27 7.0
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 27 7.0
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076... 27 7.0
03_05_0920 - 28812796-28813325,28814019-28816377 27 7.0
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 26 9.2
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 97.1 bits (231), Expect = 4e-21
Identities = 59/141 (41%), Positives = 77/141 (54%), Gaps = 18/141 (12%)
Frame = +3
Query: 6 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 185
M ++K ELR K+ + LRVAKVTGG +KLSKI+VVR +IARV V
Sbjct: 1 MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
Query: 186 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKH------------------EAKI 311
QK + LR YK K PLDLR KKTRA+R+ L+KH + +
Sbjct: 61 ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSL 120
Query: 312 KTRKEIRKKSLFPPRVYAVKA 374
KT +E +++ FP R YA+KA
Sbjct: 121 KTEREKKREKYFPMRKYAIKA 141
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 50.0 bits (114), Expect = 7e-07
Identities = 35/102 (34%), Positives = 49/102 (48%)
Frame = +3
Query: 6 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 185
M ++K LR ++ + LRVA+VTGG +KLS I+ VR A+
Sbjct: 108 MARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALREA--- 163
Query: 186 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKI 311
Y K K PLDLR KKT A+R+ L+KH+ +
Sbjct: 164 ----------YKKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195
>12_01_0152 - 1168928-1169377
Length = 149
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 108 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 197
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>11_01_0155 - 1287003-1287452
Length = 149
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 108 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 197
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 189 HQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKE 326
H K + ++ NK+ L L+ K+ + + L + E KI R+E
Sbjct: 270 HTKATLKIKEDDINKRLAELHLQEKEAESKNRKLEEREKKIAEREE 315
>06_01_0570 +
4026889-4027537,4028340-4028689,4029258-4029433,
4029593-4029659,4029746-4029780,4030084-4030186,
4031606-4031699,4031764-4031813,4031889-4032000,
4032275-4032401,4032491-4032941
Length = 737
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = -1
Query: 362 IHSRWKERLLSNFLPSFDFCFMFAQSLTHSTSLLCSQVQRLIFLVLVMVAEVY 204
+ +W+ + N P+F + + H SL+ R++ LVL + VY
Sbjct: 417 LKDKWRNMMSENLYPAFAVYIIPTVVINHQCSLVHFATTRMLNLVLPFLFLVY 469
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -1
Query: 350 WKERLLSNFLPSF---DFCFMFAQS-LTHSTSLLCSQVQRLIFLVLV 222
+K R+L+N P F FC F + + HS+++ C ++ R VLV
Sbjct: 9 YKLRILANSFPVFLTSIFCIFFREEFVAHSSNVNCLKIGRKTSRVLV 55
>04_04_1499 -
34006999-34007232,34007371-34007440,34007580-34007637,
34007940-34007979,34008183-34008259,34008366-34008582,
34008703-34009266
Length = 419
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 161 SNRPRIHCVPPENEGKPPLPLQE 229
S P+IH PP+ KP LP +
Sbjct: 177 SGEPKIHSFPPQVAAKPILPAMD 199
>03_05_0920 - 28812796-28813325,28814019-28816377
Length = 962
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 255 SSPKAYISCSCNGSGGLPSFSGGTQCIRGRL 163
SSP+A+ +C+ +G + + G + + GRL
Sbjct: 66 SSPRAWAGVTCDSAGRVTAVQVGNRSLTGRL 96
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 135 LSKIRVVRKAIARVYIVYHQKMKVNLRYHYKNKKYKPLDL 254
+SK ++K + R + HQ +K +L K +Y PLDL
Sbjct: 610 ISKENSIKKQVTRYKM--HQHLKFHLGEISKTSEYDPLDL 647
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,510,537
Number of Sequences: 37544
Number of extensions: 151813
Number of successful extensions: 521
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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