Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I14
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...   106   5e-24
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   1.5  
U40797-9|AAK95870.1|  349|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z66520-6|CAA91385.1|  226|Caenorhabditis elegans Hypothetical pr...    27   4.7  
U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical p...    27   4.7  
U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical p...    27   4.7  
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical...    27   4.7  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    27   4.7  
Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical...    27   6.2  
AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical ...    27   6.2  
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    27   6.2  
U58737-3|AAM69082.2|  189|Caenorhabditis elegans Hypothetical pr...    26   8.2  
AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical ...    26   8.2  
AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical ...    26   8.2  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score =  106 bits (255), Expect = 5e-24
 Identities = 58/123 (47%), Positives = 73/123 (59%)
 Frame = +3

Query: 6   MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 185
           M K+KC  LR +                  LRV+KVTGG ASKLSKIRVVRK IAR+  V
Sbjct: 1   MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60

Query: 186 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFPPRVYA 365
            +Q  K  LR  Y + KYKP+DLR KKTRA+R+ L+ HE  +++ K+  K      R +A
Sbjct: 61  INQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFA 120

Query: 366 VKA 374
           VKA
Sbjct: 121 VKA 123


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 207 NLRYHYKNKKYKPLDLR--TKKTRAMRKALSKHEAKIKTRKEIRKKSL 344
           N+RY Y+N K+ P  +R  TKK + ++  L  H    K  KE+ K+++
Sbjct: 64  NIRYGYRNGKWGPSKVRHATKKEQEIKYFL--HPDGTKLGKELMKETI 109


>U40797-9|AAK95870.1|  349|Caenorhabditis elegans Hypothetical
           protein C28C12.12 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 192 QKMKVNLRYHYK-NKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFPP 353
           +KM   LRY    N++   ++ + KKT+ +   L KH AK+    ++ KKS   P
Sbjct: 139 KKMVQELRYELMPNEERDRVEYQRKKTKKLVDGLLKHTAKV-FYVDVEKKSKEDP 192


>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical protein
            Y37A1B.1a protein.
          Length = 1222

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 123  VASKLSKIRVVRKAIARVYIVYHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSK 296
            V+ +LS I  +R+A A +     +K  ++  YH  NKK      + K T+    AL +
Sbjct: 1072 VSEQLSLIEQLREAKAEID---KKKKDIDSHYHKSNKKLNETSAQLKSTQDENSALKQ 1126


>Z66520-6|CAA91385.1|  226|Caenorhabditis elegans Hypothetical
           protein F49E12.8 protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 161 SNRPRIHCVPPENEGKPPL 217
           S+R R+H  PP +EG+ PL
Sbjct: 19  SSRYRVHSAPPTSEGRIPL 37


>U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical
           protein C17G10.6b protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 155 QKSNRPRIHCVPPENEG-KPPLPLQE 229
           +K  R +I+C PP+ E  +PP PL +
Sbjct: 403 KKQKRKKINCPPPQREHYQPPQPLPQ 428


>U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical
           protein C17G10.6a protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 155 QKSNRPRIHCVPPENEG-KPPLPLQE 229
           +K  R +I+C PP+ E  +PP PL +
Sbjct: 454 KKQKRKKINCPPPQREHYQPPQPLPQ 479


>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
            protein Y37A1B.1a protein.
          Length = 1222

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 123  VASKLSKIRVVRKAIARVYIVYHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSK 296
            V+ +LS I  +R+A A +     +K  ++  YH  NKK      + K T+    AL +
Sbjct: 1072 VSEQLSLIEQLREAKAEID---KKKKDIDSHYHKSNKKLNETSAQLKSTQDENSALKQ 1126


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 186 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKK 338
           + QK K  ++   K+KK K    + KK +   K  +K + + + R+E RKK
Sbjct: 288 FEQKKKKKVKKSKKSKKDKK---KEKKEKKKSKKANKEKEERRARREQRKK 335


>Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical
           protein R10D12.8 protein.
          Length = 588

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 144 IRVVRKAIARVYIVYHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRK 284
           IR++ KA+         K K+ ++++  N K  PL   T K  +  K
Sbjct: 523 IRIIEKAVENTLCSSVNKEKLRMKFNLANSKQMPLAESTLKRESKDK 569


>AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical
           protein Y73F8A.17 protein.
          Length = 380

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 207 NLRYHYKNKKYKPLDLR--TKKTRAMRKALSKHEAKIKTRKEIRKKSL 344
           N+RY +KN K+ P  +R  TKK + ++  L  H    K  +E+ K+++
Sbjct: 64  NIRYGFKNGKWGPSKVRHATKKEQEIKYFL--HPDGTKLGEELMKETI 109


>AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical
           protein Y79H2A.3b protein.
          Length = 1271

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 186 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFP 350
           YH    +N+ + Y +   + LD   ++ +A++  +S    +  T+K  R  S FP
Sbjct: 324 YHAMKYLNMIHSYNSYLAQQLDGPERRAKALKMLISTLTLENDTKKVARTLSHFP 378


>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
           protein Y79H2A.3a protein.
          Length = 2129

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 186 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFP 350
           YH    +N+ + Y +   + LD   ++ +A++  +S    +  T+K  R  S FP
Sbjct: 324 YHAMKYLNMIHSYNSYLAQQLDGPERRAKALKMLISTLTLENDTKKVARTLSHFP 378


>U58737-3|AAM69082.2|  189|Caenorhabditis elegans Hypothetical
           protein ZK54.3 protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 353 RWKERLLSNFLPSFDFCFMFAQSLTHSTSLL 261
           RWK R L   L  F F F++   +T S + +
Sbjct: 24  RWKRRHLVAVLAMFGFAFIYGTQITLSNTFM 54


>AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical
           protein Y15E3A.4 protein.
          Length = 469

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 317 SFDFCFMFAQSLTHSTSLLCSQVQRLIFLVLVMVAEVYLHFLVVHNVYAGDCF 159
           ++ F + + Q    S       V  L   V+ + AEV+ +FLVV   + G  F
Sbjct: 85  AWPFHWFYTQFGARSVFFAAGVVSTLSTAVMPLAAEVHFNFLVVARFFQGVSF 137


>AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical
           protein Y6E2A.8 protein.
          Length = 444

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 249 DLRTKKTRAMRKALSKHEAKIKTRKEIRK 335
           DL+ +K   M++A    EA++K +KE  K
Sbjct: 318 DLKMRKRETMKRAEKMKEAELKKKKESSK 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,393,937
Number of Sequences: 27780
Number of extensions: 130119
Number of successful extensions: 458
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)