Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I14
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   1.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   2.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   8.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = -1

Query: 389 YMM*LSLY-SIHSRWKERLLSNFLPSFDFCFMFAQSLTHSTSLLCSQVQRLIFLVLVMVA 213
           Y+  L+ Y    S  K  L  N L S    F+    +  STSL    + + +   +++V 
Sbjct: 251 YLSVLAFYLPADSGEKIALCINILLSQTMFFLLISEIIPSTSLALPLLGKYLLFTMILVG 310

Query: 212 EVYLHFLVVHNVY 174
              +  +V+ NV+
Sbjct: 311 LSVVITIVILNVH 323


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 242 LIFLVLVMVAEVYLHFLVVHN 180
           L+F++LV +A     F+VV N
Sbjct: 88  LLFILLVQIAVAVYAFIVVKN 108


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 188 VHNVYAGDCFSDN 150
           +HN++  DCF  N
Sbjct: 84  LHNIWRPDCFFKN 96


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 228 NKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRK 335
           NK+  P   +    +  RK  +  +  I +RKE +K
Sbjct: 778 NKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKK 813


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +1

Query: 7   WVKLSVLNCERKIRKSC 57
           WV   VL+C   I   C
Sbjct: 117 WVSFDVLSCTASILNLC 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,283
Number of Sequences: 438
Number of extensions: 1362
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)