Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I12
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    29   0.73 
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   3.0  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    26   3.9  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   9.0  

>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 305 QPPSQSRNYGQSNAQYNRATTRRP 376
           QPP+++R Y +  AQ NR   ++P
Sbjct: 41  QPPTENRRYARPTAQMNRVIEQQP 64


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 425 IHEYIHSVMGNTH*IKTKHVIHKFIQQ 505
           +HE+ +SV G  H  +T+  + KF+ Q
Sbjct: 421 LHEFYNSVKGPAHSFETEDPVLKFVSQ 447


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 217 HYRSGVAKNVTQTVFRQIAKKISEYVTEAVGT 122
           HYR  V   + +     +AKK  EY T A+ T
Sbjct: 148 HYRRYVVSQIERAGNCSLAKKEMEYTTSAIAT 179


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 169 QIAKKISEYVTEAVGTTAAWGSRASTSVVV 80
           ++A   S+Y ++ V +  A G+ +STS +V
Sbjct: 589 EVASNSSDYYSQTVSSITASGTTSSTSEIV 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,213
Number of Sequences: 5004
Number of extensions: 35911
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)