Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I12
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81594-2|CAB04746.1|  416|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL110478-4|CAB54346.1|  546|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC006757-2|AAF60543.1|  416|Caenorhabditis elegans Hypothetical ...    30   1.2  
U55364-5|AAQ23124.1|  368|Caenorhabditis elegans Prion-like-(q/n...    29   2.1  
U55364-4|AAA97972.1|  382|Caenorhabditis elegans Prion-like-(q/n...    29   2.1  
U23169-3|AAV58882.1|  284|Caenorhabditis elegans Regulator of g ...    27   8.4  
U23169-2|AAM98050.1|  290|Caenorhabditis elegans Regulator of g ...    27   8.4  
U23169-1|AAL02450.1|  363|Caenorhabditis elegans Regulator of g ...    27   8.4  

>Z81594-2|CAB04746.1|  416|Caenorhabditis elegans Hypothetical
           protein T20F10.4 protein.
          Length = 416

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 359 ATTRRPLSYGWNVSLTLIMTYLIHEYIHSVMGN-TH*IKTKHVIHKFIQQYNIMV 520
           +T  +  ++GW +    IMTY I++Y  +  GN T  I   H I  F++ YN ++
Sbjct: 124 STMNKQNTFGWILETKDIMTYKINKYTKNRKGNITFCIPLTH-IFGFVECYNKVI 177


>AL110478-4|CAB54346.1|  546|Caenorhabditis elegans Hypothetical
           protein Y26D4A.10 protein.
          Length = 546

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 359 ATTRRPLSYGWNVSLTLIMTYLIHEYIHSVMGN-TH*IKTKHVIHKFIQQYNIMV 520
           +T  +  ++GW +    IMTY I++Y  +  GN T  I   H I  F++ YN ++
Sbjct: 124 STMNKQNTFGWILETKDIMTYKINKYTKNRKGNITFCIPLTH-IFGFVECYNKII 177


>AC006757-2|AAF60543.1|  416|Caenorhabditis elegans Hypothetical
           protein Y40C7B.3 protein.
          Length = 416

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 359 ATTRRPLSYGWNVSLTLIMTYLIHEYIHSVMGN-TH*IKTKHVIHKFIQQYNIMV 520
           +T  +  ++GW +    IMTY I++Y  +  GN T  I   H I  F++ YN ++
Sbjct: 124 STMNKQNTFGWILETKDIMTYKINKYTKNRKGNITFCIPLTH-IFGFVECYNKII 177


>U55364-5|AAQ23124.1|  368|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
           isoform b protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 290 QQTYNQPPSQSRNYGQSNAQYNRATTRRPLSYGWN 394
           QQ      +Q   YG S  QYN   T +P+ Y  N
Sbjct: 26  QQYQPSQGAQYDQYGSSTLQYNNGATAQPIQYNQN 60


>U55364-4|AAA97972.1|  382|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
           isoform a protein.
          Length = 382

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 290 QQTYNQPPSQSRNYGQSNAQYNRATTRRPLSYGWN 394
           QQ      +Q   YG S  QYN   T +P+ Y  N
Sbjct: 40  QQYQPSQGAQYDQYGSSTLQYNNGATAQPIQYNQN 74


>U23169-3|AAV58882.1|  284|Caenorhabditis elegans Regulator of g
           protein signalingprotein 3, isoform c protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 276 IRQGINRRITNRQARAGTMDKAMRNTTGLLRVDP 377
           +RQ I RRI + Q      D+A+++   +LR DP
Sbjct: 233 VRQVIERRIQDNQIDITLFDEAIKHVEQVLRNDP 266


>U23169-2|AAM98050.1|  290|Caenorhabditis elegans Regulator of g
           protein signalingprotein 3, isoform b protein.
          Length = 290

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 276 IRQGINRRITNRQARAGTMDKAMRNTTGLLRVDP 377
           +RQ I RRI + Q      D+A+++   +LR DP
Sbjct: 239 VRQVIERRIQDNQIDITLFDEAIKHVEQVLRNDP 272


>U23169-1|AAL02450.1|  363|Caenorhabditis elegans Regulator of g
           protein signalingprotein 3, isoform a protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 276 IRQGINRRITNRQARAGTMDKAMRNTTGLLRVDP 377
           +RQ I RRI + Q      D+A+++   +LR DP
Sbjct: 312 VRQVIERRIQDNQIDITLFDEAIKHVEQVLRNDP 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,622,684
Number of Sequences: 27780
Number of extensions: 203742
Number of successful extensions: 545
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)