Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I11
         (371 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0660 - 19768165-19769394,19770500-19770752,19771307-197713...    30   0.50 
08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099     29   1.5  

>08_02_0660 -
           19768165-19769394,19770500-19770752,19771307-19771372,
           19771524-19771588,19773265-19773343,19773920-19774293
          Length = 688

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 127 PPSPFHHDNIYEYIDII 77
           PP PFHH +IY+ ++++
Sbjct: 409 PPRPFHHGDIYQQVEVV 425


>08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099
          Length = 453

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 127 PPSPFHHDNIYEYIDI 80
           PP PFHH ++Y+ +++
Sbjct: 190 PPRPFHHGDVYQQVEV 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,176,872
Number of Sequences: 37544
Number of extensions: 113884
Number of successful extensions: 248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)