Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I11
         (371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    27   3.2  
Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    26   9.9  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    26   9.9  

>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 204 QVLQKQNFRYFWHHQFVSNSLSKTLCPPPLSTMIIYTSTL 85
           Q + +    + WH+ F+   L+ TL PP    + +Y  TL
Sbjct: 124 QEIGRNTLIFSWHYLFIIAYLTSTLIPPS-DHLAVYNETL 162


>Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical
           protein C49F5.2 protein.
          Length = 708

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 166 SPICKQ*FKQNPLPPSPFHHDNIYEYIDIILQK 68
           S IC +    NP   + F H +I+EY D+ L +
Sbjct: 165 STICAELRNVNPARIADFRHPSIFEYSDMSLNE 197


>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical protein
            F39B1.1 protein.
          Length = 1607

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 17/70 (24%), Positives = 24/70 (34%)
 Frame = +1

Query: 34   YVDNFLLITFKFFVKLCQCTRIYYHXXXXXXXXXXXXTIAYKLVMPKVSKILLL*HLNGP 213
            +V  FL+  F    ++C C  +Y               I   L MP   +I L    N  
Sbjct: 1426 HVQKFLIYLFNQVDEICHCDLVYTFFHSILRDNKCDTYIDESLDMPSQCQIYLKIEYNSV 1485

Query: 214  KSALLILSLH 243
            K  L +   H
Sbjct: 1486 KETLSVFIGH 1495


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical protein
            F39B1.1 protein.
          Length = 1607

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 17/70 (24%), Positives = 24/70 (34%)
 Frame = +1

Query: 34   YVDNFLLITFKFFVKLCQCTRIYYHXXXXXXXXXXXXTIAYKLVMPKVSKILLL*HLNGP 213
            +V  FL+  F    ++C C  +Y               I   L MP   +I L    N  
Sbjct: 1426 HVQKFLIYLFNQVDEICHCDLVYTFFHSILRDNKCDTYIDESLDMPSQCQIYLKIEYNSV 1485

Query: 214  KSALLILSLH 243
            K  L +   H
Sbjct: 1486 KETLSVFIGH 1495


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,632,289
Number of Sequences: 27780
Number of extensions: 112749
Number of successful extensions: 308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)