Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I10
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    88   8e-19
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    27   2.0  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    26   3.5  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    26   4.6  
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    26   4.6  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.6  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 88.2 bits (209), Expect = 8e-19
 Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
 Frame = +2

Query: 5   ISLGGQHQGVYGIPHCGALKHETCDYIRKLLNFAAYNSWVQGSLVQATYWHDPLDEPAYK 184
           I+LG  H G+  IP C          +  +L    ++SW+Q  +VQA Y+        Y 
Sbjct: 128 ITLGSPHSGINTIPGCSPTNLICKAVVHSILGLGIWHSWIQNHVVQAQYYRTEKQYDKYL 187

Query: 185 QNSIFLADINNERTVNKTYIRNLNK---LEKMVLVKFDNDTIVQPRETEWFGFYAPGQAK 355
           +N+ FL  +NNE  ++  Y RN+ K   L+ +V V F+ D IV+P  +  FG+      +
Sbjct: 188 ENNKFLTHLNNE-VLHDNYTRNIEKLKELDNLVAVSFERDDIVEPPYSTGFGWINETTGE 246

Query: 356 KLLTLQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLR 469
             + +++  +Y  + LGLK +  +GKL  +S PG HL+
Sbjct: 247 N-IEMEDFVLY--ESLGLKDLVNQGKLETISFPGRHLQ 281


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 74  CDYIRKLLNFAAYNSWVQGSLVQATYWHDPLDE 172
           C   RK+++    N  +  S V A Y+ DP+DE
Sbjct: 211 CTVPRKIVHVLQKNKNLISSAVNAFYYRDPIDE 243


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 91  FPDIVTCLMLESPAVRNAIHSLML 20
           FPD+V  +  E+P +R  +H  +L
Sbjct: 71  FPDVVKLVASENPEIRRLVHIYLL 94


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 179 YKQNSIFLADINNERTVNKTYIRNLNKLEKMVLVK 283
           YK    F+AD++++   NK   R  N L K+ L K
Sbjct: 724 YKNQKNFIADLDSDVGKNKFGKRGFNPLNKVSLPK 758


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 152 WHDPLDEPAYKQNSIFLADINNERTVNKTYIRNLNKLEKMVL 277
           WHDP DEP    +S+F  D + E      YI + N+L +++L
Sbjct: 317 WHDPSDEPVC--DSVF--DFSFE------YIEDANELRRVIL 348


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 179 YKQNSIFLADINNERTVNKTYIRN-LNK 259
           YK + +FL ++ N+ +  KTY  N LNK
Sbjct: 300 YKSHQVFLQELQNKYSEIKTYSSNKLNK 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,867
Number of Sequences: 5004
Number of extensions: 44467
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)