Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I10
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0008 + 84955-85048,85165-85225,85375-85426,85554-85661,856...   119   1e-27
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984...    36   0.023
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498...    29   2.7  

>03_01_0008 +
           84955-85048,85165-85225,85375-85426,85554-85661,
           85662-85715,86140-86190,86348-86410,87048-87113,
           87190-87228,87493-87615,88251-88343,88437-88661
          Length = 342

 Score =  119 bits (287), Expect = 1e-27
 Identities = 64/173 (36%), Positives = 93/173 (53%), Gaps = 2/173 (1%)
 Frame = +2

Query: 2   YISLGGQHQGVYGIPHCGALKHETCDYIRKLLNFAAYNSWVQGSLVQATYWHDPLDEPAY 181
           +ISLGG H G   +P CG+     C     L+    Y+ +VQ  L  + Y   P D   Y
Sbjct: 144 FISLGGPHAGTASVPLCGS--GIFCILADSLIKMEIYSDYVQAHLAPSGYMKIPTDISDY 201

Query: 182 KQNSIFLADINNERTV--NKTYIRNLNKLEKMVLVKFDNDTIVQPRETEWFGFYAPGQAK 355
            +   FL  +NNE     N TY    + LE +VL+ F +D ++ PRET WFG+Y  G   
Sbjct: 202 LKGCRFLPKLNNELPGERNATYKERFSSLENLVLIMFQDDAVLIPRETAWFGYYPDGGFD 261

Query: 356 KLLTLQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLRFTDQWMISEIINPYL 514
            +L  Q++ +Y +D +GLK +D EG++ F+S PG HL  +   M+  I+ PYL
Sbjct: 262 PVLPPQKTKLYMEDWIGLKTLDDEGRVKFVSVPGGHLGISKTDMMKYIV-PYL 313


>10_08_0939 +
           21696941-21697049,21697171-21697255,21698385-21698457,
           21698553-21698609,21698660-21698713,21699196-21699246,
           21699441-21699503,21700453-21700518,21700625-21700663,
           21702190-21702271,21703479-21703536,21703698-21703914,
           21704248-21704697
          Length = 467

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 2   YISLGGQHQGVYGIPHCGALKHETCDYIRKLLNFAAYNSWVQGSLVQATYWHDP 163
           +IS+GG H G   +P CG+     C  I  L+    Y+++VQ  L  + Y   P
Sbjct: 147 FISIGGPHAGTASVPLCGS--GIVCVLIDALIKLEIYSNYVQAHLAPSGYLKIP 198



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +2

Query: 362 LTLQESAIYTQDRLGLKRMDKEGKLVFLSTPG 457
           L +  + +YT+D +GLK +++ G++ F+S PG
Sbjct: 195 LKIPTTKLYTEDWIGLKALEEAGRVKFVSVPG 226


>07_01_0664 +
           4979892-4979931,4980040-4980236,4982340-4982723,
           4983499-4983549,4983659-4983741,4983818-4983917,
           4984410-4984488,4984957-4985080,4985605-4985711,
           4985810-4985938,4987004-4987089,4987200-4987367,
           4987477-4987637,4987721-4987752,4987866-4988047,
           4988386-4988465,4988885-4988950,4989060-4989349,
           4990433-4990540,4991521-4991618,4991680-4991782,
           4992269-4992345,4992449-4992520,4992579-4992670,
           4992909-4992989,4993290-4993392,4994334-4994492,
           4994696-4995085
          Length = 1213

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 122 VQGSLVQATYWHDPLDEPAYKQNSIFLADIN--NERTVNKTYIRNLNKL 262
           + G L++  YW    DE   K   I LAD N  NE    ++Y R  NKL
Sbjct: 816 LMGDLIKGRYWQKVADERKKKPFRITLADKNAPNEEVWRQSY-RFYNKL 863


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,510
Number of Sequences: 37544
Number of extensions: 278150
Number of successful extensions: 577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)