Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I10
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.8  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   3.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   3.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   6.7  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   6.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +1

Query: 1    LHISWRPASRSVWHSSLRG 57
            L ++W+P  R  W+  + G
Sbjct: 993  LKVTWKPPPREDWNGEILG 1011


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 163 GIMPVGRLN*GTLDPAVI 110
           G +PVGR+  G L P ++
Sbjct: 203 GTVPVGRVETGVLKPGMV 220


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 163 GIMPVGRLN*GTLDPAVI 110
           G +PVGR+  G L P ++
Sbjct: 260 GTVPVGRVETGVLKPGMV 277


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 188 NSIFLADINNERTVN 232
           N +F+AD+NN+ T +
Sbjct: 313 NFMFIADLNNQSTAS 327


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 163 GIMPVGRLN*GTLDPAVI 110
           G +PVGR+  G L P ++
Sbjct: 260 GTVPVGRVETGILKPGML 277


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +2

Query: 200 LADINNERTVNKTYIRNLNKLEKM 271
           +++ NN+   NK    N+N +E++
Sbjct: 93  ISNYNNDNNYNKKLYYNINYIEQI 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,556
Number of Sequences: 438
Number of extensions: 3276
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)