Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I09
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    26   1.5  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    26   1.5  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   2.6  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    24   5.9  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    24   5.9  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    24   5.9  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    23   7.9  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    23   7.9  

>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 208 VCTV*SMPCVAPVFGPGSHSPSLGKCTSPTSNFS 107
           +C +  +PC A    P SHS    KC  PT N S
Sbjct: 194 ICLMPVLPCQALFVAPCSHSYHY-KCIRPTLNES 226


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 219 WLPLSVRFDLCLALPRCLGLGHTRPVSENVLLPHQILVLPN 97
           W P+ +R  +     RCL          NV++P+ I  + N
Sbjct: 302 WTPVELRHSIFFCCLRCLSSSRIVNSETNVMVPYMIYSILN 342


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 21/60 (35%), Positives = 26/60 (43%)
 Frame = -3

Query: 229 FHNMASPVCTV*SMPCVAPVFGPGSHSPSLGKCTSPTSNFSLA*LYAITCKGRLRSPDXQ 50
           F   ASP  T+       P+   G H  SL   TSP   FS +   + T   R RSP+ Q
Sbjct: 317 FAGSASPYKTMSLTDRAEPIVMNG-HMRSLHNATSPFRPFSPSYRSSDTHSPRTRSPNVQ 375


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 162 LGHTRPVSENVLLPHQILVLPN 97
           +G+T PVS N LL    LV+ N
Sbjct: 397 MGNTAPVSSNQLLKDADLVMEN 418


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 190 MPCVAPVFGPGSHSPSLGKCTSPTS 116
           MP   PVF  GS +P      SP+S
Sbjct: 1   MPSDKPVFDIGSQAPERSDSESPSS 25


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 169 FGPGSHSPSLGKCTSPTS 116
           FG  +    LGKCT PTS
Sbjct: 333 FGHNADPIYLGKCTGPTS 350


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 264 MKRGRSRGHTASSTIWLPLSVRFDL 190
           M  G  + + ASS + L LS +FDL
Sbjct: 82  MTTGEGKSNAASSIMALTLSPKFDL 106


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
 Frame = +3

Query: 111 KFDVGEV----HFPRLGECDPGPNTGA--TQGIDQTVQTGEAILW 227
           KF  GEV     F +    D   + G   T+G D TV+ G+ I W
Sbjct: 359 KFVAGEVIKFSDFEKYKSVDACKSVGKCKTKGKDYTVEPGDIIFW 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,232,434
Number of Sequences: 5004
Number of extensions: 23638
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)