Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I09
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-10|CAA80187.1|  266|Caenorhabditis elegans Hypothetical p...    27   2.0  
AY428645-1|AAR27937.1|  892|Caenorhabditis elegans microsomal tr...    26   4.7  
AF045645-4|AAC02607.3|  892|Caenorhabditis elegans Defecation su...    26   4.7  

>Z22181-10|CAA80187.1|  266|Caenorhabditis elegans Hypothetical
           protein ZK632.12 protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 282 KCSEELMKRGRSRGHTASSTIWLP 211
           +C  +L++RG  +  TA + +W+P
Sbjct: 128 RCVTDLLERGNKQAATAHAAVWVP 151


>AY428645-1|AAR27937.1|  892|Caenorhabditis elegans microsomal
           triglyceride transferprotein protein.
          Length = 892

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 231 SSTIWLPLSVRFDLCLALP 175
           SS IWL L+V   +CLA+P
Sbjct: 3   SSRIWLLLAVTVGVCLAVP 21


>AF045645-4|AAC02607.3|  892|Caenorhabditis elegans Defecation
           suppressor of clk-1protein 4 protein.
          Length = 892

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 231 SSTIWLPLSVRFDLCLALP 175
           SS IWL L+V   +CLA+P
Sbjct: 3   SSRIWLLLAVTVGVCLAVP 21


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,167,290
Number of Sequences: 27780
Number of extensions: 147688
Number of successful extensions: 329
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)