Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I05
         (297 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428...    85   1e-17
04_04_1138 - 31162440-31163488,31163910-31164164,31164386-311645...    28   1.5  
12_02_0841 + 23579344-23579394,23579522-23579584,23579717-235798...    26   4.6  
02_01_0123 + 896128-896429,896578-896608,896903-896995,897096-89...    26   6.0  
01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794...    26   6.0  
01_06_0853 - 32468690-32468857,32469398-32469535,32469930-324701...    26   6.0  

>01_06_1797 +
           39941482-39941608,39942302-39942497,39942601-39942828,
           39943157-39943388,39943476-39943583,39943696-39943968,
           39944261-39944545
          Length = 482

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 42/75 (56%), Positives = 51/75 (68%), Gaps = 5/75 (6%)
 Frame = +2

Query: 86  SCC---KGPGYASPLDAFNNGPREEILYVVAVQPDK--SKQDYLATVDVNPKSPTYSQVI 250
           +CC    GPGYA+PL+A   GPRE++LYV  V      +K DYL TVDV+P SPTYSQVI
Sbjct: 9   ACCGGATGPGYATPLEAMEKGPREKLLYVTCVYNGTGINKPDYLGTVDVDPNSPTYSQVI 68

Query: 251 YRTYTGSVDNELHHS 295
           +R     V +ELHHS
Sbjct: 69  HRLPVTHVGDELHHS 83


>04_04_1138 -
           31162440-31163488,31163910-31164164,31164386-31164500,
           31164523-31164579,31164580-31164632,31164721-31164981,
           31165243-31165293,31165395-31165430,31165815-31166040,
           31166082-31166132,31166346-31166465
          Length = 757

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 187 AFVWLYSDHIKDFFSRSIIESI*W 116
           A++  + DH+ D F RSI +SI W
Sbjct: 305 AYIIAHKDHVADAFYRSIPDSIYW 328


>12_02_0841 +
           23579344-23579394,23579522-23579584,23579717-23579826,
           23580220-23580320,23580816-23580877,23580972-23581112,
           23581388-23581523,23582257-23582284,23582665-23582728,
           23582924-23583044,23583565-23583623,23583716-23583784,
           23583875-23584015,23584130-23584194,23584345-23584441,
           23584803-23584862,23585409-23585561,23586022-23586088,
           23586174-23586284,23586689-23586799,23587370-23587567,
           23587679-23587860
          Length = 729

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 54  VWSSYFAYLKCLAVKDPATHLH*MLSIMDREKKSFM 161
           VW  Y A+LK + V  P    H M ++    +K+ +
Sbjct: 117 VWMDYIAFLKSMPVVTPQEESHRMTTVRKVYQKAIL 152


>02_01_0123 +
           896128-896429,896578-896608,896903-896995,897096-897158,
           897279-897390,897947-898032,898845-898903,898990-899092,
           899182-899242,899472-899554,899635-899715,900018-900077
          Length = 377

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 188 KQDYLATVDVNPKSPTYSQVIYRTYTG 268
           ++DY  T+ V P    YS  ++R Y G
Sbjct: 278 QRDYSKTIAVTPYIVNYSGAVFRQYPG 304


>01_06_0854 -
           32477994-32478161,32478689-32478826,32479225-32479440,
           32479580-32479656,32481144-32481555,32482248-32482850,
           32482954-32483229
          Length = 629

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 164 VAVQPDKSKQDYLATVDVNP 223
           VA  PDK+ +DY+A++   P
Sbjct: 124 VAADPDKAVEDYVASLSTKP 143


>01_06_0853 -
           32468690-32468857,32469398-32469535,32469930-32470145,
           32470280-32470356,32470483-32470549,32471264-32471866,
           32471971-32472258
          Length = 518

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 164 VAVQPDKSKQDYLATVDVNP 223
           VA  PDK+ +DY+A++   P
Sbjct: 128 VAADPDKAVEDYVASLSTKP 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,464,236
Number of Sequences: 37544
Number of extensions: 134367
Number of successful extensions: 252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)