Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I03
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    31   0.17 
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          29   0.71 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   5.0  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    26   5.0  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   6.6  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.6  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   8.7  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   8.7  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +1

Query: 181 IQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAAS-EEREHAMKLIDYLLMRGELISD 357
           I  +++A +  +  G   +  V+ + G   LF+   S   REH +KLI  +L       +
Sbjct: 287 IVNDLEACLDDIDKGLILNDHVLEKTGRTSLFYLPCSIYGREHEIKLIRKILRNSPRAIN 346

Query: 358 VSDLITVKNFEPVYFNS 408
             D   ++ F P Y N+
Sbjct: 347 HQDKKDLETFNPYYLNA 363


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -2

Query: 229 GHPLPDIVRTRPPQFVFAR--ACCLYKDCALSPIRRIHLLGSRDIV*R 92
           GHP P  V T PP    +     C YK C     R IH   SR++  R
Sbjct: 231 GHPSPATVTTLPPFMSMSTIPIPCKYKPCLNPACRFIHPTKSRNMTWR 278


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 6   RQSICDFNYKNEGFISCNRRYPGCLYACYRYTMSREPSKCILRMGDNAQS 155
           R ++C    KN   + C      C Y C++    +  +KCI +  D+A S
Sbjct: 418 RCALCGEFLKNAAGMQCI----DCHYTCHKKCYPKVVTKCISKSSDSASS 463


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 184 QTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYL 330
           +T  DA  + L +G H   D  NRP  AKL    +    +  + L DY+
Sbjct: 410 KTFYDAFSKNLKLGIH--EDAANRPALAKLLRYNSLNSPDDLISLEDYI 456


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 139 VTMHNPCKDSMHAQIQTEVD-ASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMK 315
           +T+ +P K+     ++T  + AS+Q +        ++ N P F     DAASEE EH   
Sbjct: 372 ITVTDPSKNLYERSVKTAAELASLQNVTETT--DNEIPNSPDF----LDAASEEDEHIPS 425

Query: 316 L 318
           L
Sbjct: 426 L 426


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 12  SICDFNYKNEGFISCNRRYPGCLYACYRY 98
           ++CD +  +   + CNR+YP C   C +Y
Sbjct: 54  TVCDVSSNSTFVVKCNRQYP-CT-RCLKY 80


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 343 ELISDVSDLITVKNFEPVYFNSGADALEAALNMESFVT 456
           +L +++SDL+     + ++ ++G +A EAAL M    T
Sbjct: 96  QLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYT 133


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/83 (24%), Positives = 37/83 (44%)
 Frame = -1

Query: 383  FLTVIRSLTSEISSPLMSK*SISFIACSLSSLAASKNSFANPGRLITSREKWAPIARYCT 204
            FLT+I ++ S   S +++   + ++   + +LAA   +   P   +  R+   P A   T
Sbjct: 952  FLTIISAVASTDQSSVLTAVQLLWVNLIMDTLAALALATDPPTPEVLKRKPEKPGASLFT 1011

Query: 203  DASTSVCICACMLSLQGLCIVTH 135
                 + IC  M  L  + +V H
Sbjct: 1012 FDMWKMIICQSMYQL-AVTLVLH 1033


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,229
Number of Sequences: 5004
Number of extensions: 49795
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)