Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I03
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    67   1e-11
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    52   5e-07
01_06_0092 - 26377011-26377613,26379581-26380168                       32   0.42 
05_03_0231 - 10696096-10696315,10696348-10696697                       31   0.55 
04_01_0213 - 2692253-2694562                                           31   0.55 
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589...    30   1.7  
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732...    29   2.2  
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916...    29   2.9  
01_05_0554 + 23221374-23222017,23222158-23222296                       29   3.9  
08_01_0108 - 791835-792398                                             28   5.1  
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383...    28   5.1  
05_01_0372 - 2913518-2916562,2916674-2917528                           28   5.1  
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864...    28   6.8  
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909...    27   8.9  
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201...    27   8.9  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 37/112 (33%), Positives = 59/112 (52%)
 Frame = +1

Query: 157 CKDSMHAQIQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYLLM 336
           C+ ++  QI  E +AS  Y ++ A+F RD +   GFAK F +++ EER+HA KL+ Y  M
Sbjct: 91  CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150

Query: 337 RGELISDVSDLITVKNFEPVYFNSGADALEAALNMESFVTKSIRGVIDVCER 492
           RG  +   S +  +  F+         A+E AL +E  V + +  +  V  R
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEKGDALYAMELALALEKLVNEKLHNLHSVASR 202


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 25/51 (49%), Positives = 34/51 (66%)
 Frame = +1

Query: 190 EVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYLLMRG 342
           E +AS  Y ++ A+F RD +   GFAK F +++ EER+HA KLI Y  MRG
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRG 184


>01_06_0092 - 26377011-26377613,26379581-26380168
          Length = 396

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = -3

Query: 549 GFKFLGLRIFVVVFLGFGIPLAYVNDASDALCYERFHVQSSLQSIGPAIEVYRFEVFDGD 370
           G   LG R  VV + G   P+ ++ND    L      + +  +S  P +      ++   
Sbjct: 123 GVAALGRRDVVVAWRGTVRPMEWLNDLDFTLVSAAGVLGAGGRSPAPRVHRGWLSIYTAS 182

Query: 369 KIADVRNKLSPHEQVVDQLHRML 301
             A   +KLS  EQ+ D++ R++
Sbjct: 183 DPASKYSKLSAREQISDEIKRLM 205


>05_03_0231 - 10696096-10696315,10696348-10696697
          Length = 189

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +3

Query: 372 HRQKLRTCILQ*RGRCFGGCSEHGIVRNKEHQRRH*RMREGSQTQGKQQQR 524
           H Q L +C++  R R  G  + H   R++  +RR  R+R  +Q  G+Q++R
Sbjct: 93  HGQMLSSCLMACRRRSAGAVATH---RSQPRRRRATRLRVKAQPSGQQRRR 140


>04_01_0213 - 2692253-2694562
          Length = 769

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = -3

Query: 354 RNKLSPHEQVVDQLHRMLPLFASRVEEQLRESWTIDH---VTGEMGTHCQILYGRVHLSL 184
           R K+  +EQ++   H ML +      + +     +D    V  E     ++LY  V + L
Sbjct: 201 RRKMDNNEQILLAAHDMLHITKGAFIDNMAYEHDVDKQEIVRPETWNENEMLYDVVDMEL 260

Query: 183 YLRVHAVFTRIVHCHPFGGY 124
            L    ++T+    H +GGY
Sbjct: 261 SLMYDILYTKAAMVHTWGGY 280


>03_02_0143 -
           5888005-5888088,5888818-5888949,5889485-5889634,
           5890540-5890710,5890840-5891007,5891139-5891234,
           5891777-5891839,5891949-5892114,5892207-5892274,
           5892646-5892789,5893111-5893176,5893329-5893520,
           5894567-5894657,5895241-5895329,5895521-5895583,
           5895698-5895823,5895902-5895991,5896059-5896181,
           5896503-5896619,5896704-5896904,5897643-5897723,
           5897897-5897977,5898083-5898184,5898264-5898488,
           5898571-5898726,5898798-5899010,5899306-5899455,
           5900082-5900204,5900299-5900364,5900555-5900620,
           5900686-5900817,5900891-5900965,5901355-5901438,
           5901516-5901668,5901741-5901806,5902044-5902205,
           5902272-5902388,5902495-5902566,5902702-5902761,
           5902869-5902985,5904131-5904430,5904518-5904622,
           5905710-5905775,5905853-5906297,5906399-5906567,
           5906684-5906736,5906819-5906925
          Length = 1981

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = -1

Query: 383 FLTVIRSLTSEISSPLMSK*S-ISFIACSLSS-LAASKNSFANPGRLITSREKWAPIARY 210
           ++  +++L +E++S    + S ++ +   L+  +  +KN       ++T+ EKW  I R 
Sbjct: 493 YVAPMKALAAEVTSTFSRRLSPLNLVVRELTGDMQLTKNEIEETQMIVTTPEKWDVITRK 552

Query: 209 CTDASTSVCI 180
            +D S S+ +
Sbjct: 553 SSDMSLSMLV 562


>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
            20773357-20773701,20773858-20773952,20774218-20774344,
            20774430-20774435
          Length = 1462

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = -3

Query: 270  LRESWTIDHVTGEMGTHCQILYGRVHLSLYLRVHAVFTRIVHCHPFGGYICWVHVTLYSD 91
            L+ SW+   +    GT C    G   LS++LRV+   TR+   +P G  I     T+   
Sbjct: 880  LKCSWSTTCIDDGSGTMCAGSTGEKALSVHLRVNGE-TRMYEMNP-GHVIAGSSATVNQS 937

Query: 90   SRRRDSQGTD 61
             R  D  G D
Sbjct: 938  ERVNDGLGDD 947


>07_03_0603 -
           19890664-19890823,19891104-19891329,19891498-19891636,
           19891849-19891942,19892291-19892311,19892506-19892941,
           19893133-19893280,19893369-19893476,19893543-19893659,
           19893960-19894016,19894488-19894553,19895140-19895328,
           19895410-19895523,19895684-19895766,19895857-19896322,
           19896832-19897476
          Length = 1022

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 306 MLPLFASRVEEQLRESWTIDHVTGEMGTH 220
           M P  A+ + + LRE  ++D VT  MG+H
Sbjct: 169 MTPAMAASLRDSLREVCSLDDVTERMGSH 197


>01_05_0554 + 23221374-23222017,23222158-23222296
          Length = 260

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -1

Query: 446 DSMFRAASKASAPLLKYTGSKF-LTVIRSLTSEISSPLMSK*SISFIACSLSSLAASKNS 270
           D +F     A +P   + G +  L ++ SLT + S+PL S+  +      ++    SKNS
Sbjct: 51  DLIFFPGLGAKSPRSSFLGDRVGLGLVDSLTDDSSTPLGSRKVLLGSEMRITDNVTSKNS 110

Query: 269 FANP 258
           F  P
Sbjct: 111 FTAP 114


>08_01_0108 - 791835-792398
          Length = 187

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +3

Query: 276 LRRG*RREGACDEADRLLAHEGRAYF*RQRSYHRQKLRTCILQ*RGR--C--FGGCSEHG 443
           LRR  RR GA   A+ ++A + R  + R+RS  RQ+ R    + R R  C   GGC   G
Sbjct: 88  LRRPRRRGGARGRAEVVVAGKRRRSWRRRRSRTRQRRRRSRRRRRRRRTCGGGGGCGRGG 147

Query: 444 IVRNK 458
             R +
Sbjct: 148 DARGR 152


>06_03_1183 +
           28237467-28237612,28238035-28238089,28238216-28238354,
           28238433-28238487,28238578-28238646,28239338-28239560,
           28239645-28239740,28240708-28240827,28240937-28241062,
           28241369-28241524,28242706-28242828,28242913-28242980,
           28243119-28243254,28243365-28243530,28243615-28243853
          Length = 638

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 160 KDSMHAQIQTEVDASVQYLAMGA-HFSRDVINRPGFAKLF 276
           ++ M A++Q  +     YL   A  FS +V+N+PGF  ++
Sbjct: 131 RNCMSARLQLTISKRSHYLVTFACWFSENVMNKPGFVDIY 170


>05_01_0372 - 2913518-2916562,2916674-2917528
          Length = 1299

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -3

Query: 438 VQSSLQSIGPAIEVYRFEVFDGDKIADVRNKLSPHEQVVDQLHRML-PLFA-SRVEEQLR 265
           V S    +  A+E+   E  + +K  +   +  P   V D    M+ P+ A S VEE   
Sbjct: 250 VVSEANGVAAAVELAVEEKLEDNKGEEEEMEAKPEPVVDDTSSEMIAPVSAESAVEESTE 309

Query: 264 ESWTIDHVTGEMGTH 220
           +  T+D  + EM  H
Sbjct: 310 KEQTVDDTSSEMIAH 324


>08_02_0290 +
           15383473-15383669,15385057-15385267,15386389-15386440,
           15386545-15386863,15387022-15387121,15387391-15387657,
           15387780-15387857,15387943-15388032,15388119-15388168,
           15388267-15388366,15388777-15388875,15389023-15389136,
           15389238-15389412,15389726-15390132,15390565-15390639,
           15391412-15391438
          Length = 786

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 387 EVFDGDKIADVRNKLSPHEQVVDQLHRMLPLFASRVEEQLRESW 256
           E F  D+I+ V  +L   E  VD+L    P      E  L ESW
Sbjct: 695 ETFSVDRISPVIERLQRLEGKVDELGNKPPEIPLEKERSLLESW 738


>10_07_0061 +
           12489552-12489674,12490761-12490836,12490916-12490980,
           12491089-12491166,12492156-12492236,12492813-12492974,
           12493328-12493426,12493509-12494797,12495063-12495286,
           12495373-12495500,12495596-12495634,12495724-12497178
          Length = 1272

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = -3

Query: 387 EVFDG-DKIADVRNKLSPHEQVVDQLHRMLPLFASRVEEQLRESWTIDHVTGEMGTHCQI 211
           E  DG DK  D    ++P   V+DQ     P  + +   +  + W     +GE     + 
Sbjct: 451 EQMDGMDKSKDTLQAMAPENSVLDQQQPQAPHLSQQAGPRNMQQWQNPRFSGEKDLKKEE 510

Query: 210 LYGRVHLSLYLRVHAV 163
           +  R  ++   RV +V
Sbjct: 511 MLQRRKIAATSRVSSV 526


>07_03_1503 +
           27017933-27018063,27019668-27019727,27019996-27020101,
           27020254-27020325,27021008-27021061,27021707-27021856,
           27022206-27022547,27022651-27024684,27024706-27024947,
           27025658-27026235,27026329-27028183,27028533-27028851,
           27028980-27029417
          Length = 2126

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 187 FVFARACCLYKDCALSPIRRIHLLGSRDI 101
           F+   A C Y+DC  S +R +   G RD+
Sbjct: 514 FLCEWATCDYRDCRTSLLRNVKFTGRRDL 542


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,774,472
Number of Sequences: 37544
Number of extensions: 349358
Number of successful extensions: 915
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)