Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_I02
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|...    29   0.46 
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   4.3  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   5.7  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    25   7.5  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   7.5  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.9  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    25   9.9  

>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 222

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 169 DY*NASFSPSILSIKLLYIKFSLS*MTFFN 80
           D+ N  F+PS LSI + Y K S S   ++N
Sbjct: 170 DFCNPFFNPSTLSISIPYTKMSFSIKNYYN 199


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 185 FRISLGLLKCLVFSIYFVY*TALYQVFFVLNDFFQY 78
           +RI  G   C+V SIY+ Y       F  L D F+Y
Sbjct: 370 WRIHPGTCCCVVLSIYWPYLEDKLLKFSDLGDIFEY 405


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +2

Query: 50  CTLQRCWEECIEK 88
           C+L++ W+EC++K
Sbjct: 498 CSLEKAWDECLKK 510


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 554 LLINLHGRHMPQKSSFPMYHLDSCL 480
           +LIN  G+++P   +   Y L+SC+
Sbjct: 226 ILINYPGKNLPPMETLKKYVLESCV 250


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 38  VLYHCTLQRCWEECIEKSHLRQRKLDIEQFNRQNRWRKRGISII 169
           +L HCT+ + W +C+ +      KL I   NR    +   I++I
Sbjct: 81  ILIHCTISQSW-DCLVEHGATWAKLLIALLNRPETPKTLEIAMI 123


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +2

Query: 314 ASRALGIDVSKIHISETATDKVPNTSATAAS-AGSDLNGMAVLDACQT---LMKRLQPYK 481
           A  A+  + S    SE A +  P  S       GS    +A L++      LM+   P K
Sbjct: 448 AEPAVPTEASSTKPSEAAEESTPRFSVRPNKFTGSRAGFVAALESRLQKGPLMRSFVPNK 507

Query: 482 DKNPNGT 502
            K+P+GT
Sbjct: 508 SKSPSGT 514


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 305 IQIASRALGIDVSKIHISETATDKVPNT 388
           +Q A+ AL  DVSK    ETA +KV  T
Sbjct: 43  VQDAALALQADVSKADQIETAIEKVIQT 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,498
Number of Sequences: 5004
Number of extensions: 44619
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)