Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_H24
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    28   0.59 
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    27   0.77 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   1.8  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   1.8  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    25   3.1  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   3.1  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   4.1  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   5.5  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   5.5  
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    25   5.5  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    24   7.2  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    24   7.2  
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    24   7.2  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    24   7.2  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    24   7.2  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   7.2  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    24   7.2  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    24   9.5  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    24   9.5  

>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 183 DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFNA-GFKK 314
           +KI ASAT    DFI  N+      +N F S DTS++ N  GF++
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLESNQDGFER 157


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.5 bits (58), Expect = 0.77
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 376 YXESENPKLVSQEDFMKGVSNFLKPALKSTEVSGLLKRF 260
           Y ESE+P + S  D    +S         TE S +++RF
Sbjct: 235 YQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRF 273


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 337 DFMKGVSNFLKPALKSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAPILSLNI 173
           DF K   N L           ++  FSF SRE S R +K + +A+   P L ++I
Sbjct: 576 DFAKVSDNLLFSNFVERWFQSVIGVFSFASRENSNRALKILKSAILYRPHLRMSI 630


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 306 FKKFDTPFMKSSWETNFGFSL 368
           F+K++T F+KS +  N G SL
Sbjct: 38  FEKYETSFLKSLFNGNLGLSL 58


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = +3

Query: 156 GGGIDYMFKDKIGASATAAHTDFINRNDYSL---DGKLNLFKSPDT-SVDFNAGFKKFDT 323
           GG  ++  KD      T  +   + +N  S    D K+ L K P T +  + +   +FD 
Sbjct: 63  GGPCEFEVKDLDTKFGTKVNEKVVGQNGDSYKEKDLKIQLGKCPFTINAYWRSMCIQFDN 122

Query: 324 PFMKSSWETN 353
           P M S W +N
Sbjct: 123 PEMLSQWASN 132


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 222 FINRNDYSLDGKLNLFKSPDTSVD 293
           F   N Y   G  N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 150 TVGGGIDYMFKD-KIGASATAAHTDFIN 230
           +VG  I Y  +D K+    TA+H DF+N
Sbjct: 25  SVGRAIRYCKEDGKVEGCETASHVDFLN 52


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 151 VLKLGTLAISGIFLVAKAFAVMSWXSLWKRFTLPAAVTLS 32
           ++  G+L+I  IF+    F + SW +L+   T   A TLS
Sbjct: 401 IIVFGSLSI--IFIHIYCFKITSWVNLYGWITCTIARTLS 438


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 83  VVIVVEEIHFAGSCHLVSEPG 21
           +V +  +IHF+G+C+ V+  G
Sbjct: 397 IVSIPHQIHFSGTCYSVAAGG 417


>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 210 AHTDFINRNDYSLDGKLNLFKSPDTSVDFNAGFKKFDTPFMKS 338
           +H +F + ND+S   KLN   S  +       +K+   PF K+
Sbjct: 158 SHDNFSDSNDFSFQKKLNTEDSNTSKTSTLDMYKEKLKPFTKT 200


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 213 HTDFINRNDYSLDGKLNLFKSPDT 284
           HT  +N  D+S DG+  L  S DT
Sbjct: 44  HTGCVNTLDWSADGEFLLSGSDDT 67


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 96  KAFATRNMPDIA--NVPNFNTVGGG 164
           ++FA    P++   N PN  TVGGG
Sbjct: 247 QSFAVLYSPELTSLNFPNLTTVGGG 271


>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 107 GESLRCDVVVIVVEEIHF 54
           G+S RCD  ++  EE+HF
Sbjct: 174 GQSGRCDGYILEGEELHF 191


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 231 RNDYSLDGKLNLFKSP-DTSVDFNAGFK 311
           RNDY  DG  + ++SP  ++VD N+ ++
Sbjct: 5   RNDYHYDGNDHQYRSPLKSNVDQNSFYE 32


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 107 GESLRCDVVVIVVEEIHF 54
           G+S RCD  ++  EE+HF
Sbjct: 174 GQSGRCDGYILEGEELHF 191


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 69  HNDXHDITAKAFATRNMPDIANVPNFNT 152
           H D  DITA + +T   P+  +V  F++
Sbjct: 113 HPDSEDITAVSLSTPPFPESIDVARFSS 140


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 341 GGLHE-GCIELLEAGVEIDRGVRTLEEVQLSVQGVIVTID 225
           GG +  GC+++++   EID  VR  + V   +  V +T +
Sbjct: 535 GGRYSIGCVKVIDPETEIDYAVRVAKSVDCVILCVGLTAE 574


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 177 FKDKIGASATAAHTDFINRNDYSLDGKLNLFKSPD 281
           F+D+   S   AH    N ND+++ G     K+ D
Sbjct: 370 FEDRTHLSDHGAHFHLGNANDFNMQGSSRKRKASD 404


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 14/69 (20%), Positives = 32/69 (46%)
 Frame = -1

Query: 278 RTLEEVQLSVQGVIVTIDEVRVSGGR*CTNLIFEHIVYSATDSVEVGYISDIWHISGGES 99
           R+  ++     G+   ID ++ S  R   + ++ ++VY    S+ +     +W I   + 
Sbjct: 657 RSAADIVFLAPGLSAIIDALKTS--RQIFHRMYSYVVYRIALSLHLEIFLGLWLIIRNQL 714

Query: 98  LRCDVVVIV 72
           L  ++VV +
Sbjct: 715 LNLELVVFI 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,687
Number of Sequences: 5004
Number of extensions: 30666
Number of successful extensions: 105
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)