Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_H24
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 29 1.3
02_04_0519 + 23619084-23619198,23619468-23619559,23619655-236197... 29 1.7
12_02_0412 - 18799217-18801061 28 2.3
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 28 3.0
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 27 4.0
12_02_0591 + 20864861-20867329 27 5.3
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 27 5.3
02_01_0623 - 4676847-4676879,4676953-4677115,4677467-4677620,467... 27 7.0
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473... 26 9.2
04_04_0741 + 27703869-27704186,27704278-27704337 26 9.2
02_05_0422 - 28831195-28831254,28831345-28831833,28831924-288320... 26 9.2
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 69 HNDXHDITAKAFATRNMPDIANVPNFNTVGGGIDYMFKDKIG 194
+ND H A++ N P +A N N G ++Y+F DK G
Sbjct: 377 NNDLHMYHAES----NTPALARTSNLNEELGQVEYIFSDKTG 414
>02_04_0519 +
23619084-23619198,23619468-23619559,23619655-23619735,
23620426-23620501,23620674-23620696
Length = 128
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 139 GTLAISGIFLVAKAFAVMSWXSLWKRFTLPAAV 41
G LA+ IF + ++ W S+W+ FT A +
Sbjct: 63 GLLALGNIFFLTGIGLLLGWQSMWQLFTKKANI 95
>12_02_0412 - 18799217-18801061
Length = 614
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 170 VYSATDSVEVGYISDIWHISGGESLRCDVV 81
+YS+ +E G D+W+I GG L V+
Sbjct: 23 IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 276 PDTSVDFNAGFKKFDTPFMKSSWETNFGFSLS 371
PDT+ F AGF K T WE +GF +S
Sbjct: 414 PDTATIFGAGFGKGGTSL--PFWENVYGFDMS 443
>11_04_0340 -
16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 27.5 bits (58), Expect = 4.0
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = -1
Query: 302 GVEIDRGVRTLEEVQLSVQGVIVTIDEVRVSGGR*CTNL-IFEHIVYSATDSV-EVGYIS 129
GVE+ GV+ LE +V+ V+ T + R+ +L + ++Y A D + E+ Y
Sbjct: 34 GVELTEGVKKLEFEMRNVEMVLATAEGRRIDKKPLIQSLDVLRELLYDAEDVMDELDYYR 93
Query: 128 DIWHISGGESLRCDVVVIVVEEIHFAGS 45
I GE C E +A S
Sbjct: 94 LQQQIEKGEG--CSAAAANYPEASYASS 119
>12_02_0591 + 20864861-20867329
Length = 822
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 53 AGSCHLVSEPGDVCIR 6
AG CHL EPG V +R
Sbjct: 299 AGECHLAGEPGLVAVR 314
>06_03_1208 -
28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 180 KDKIGASATAAHTDFINRNDYSLDGKLNLFKSPD 281
+D + + A T R D +DGKL++ +SPD
Sbjct: 224 EDFVDEAGNAYETACSERRDNDMDGKLHVAESPD 257
>02_01_0623 -
4676847-4676879,4676953-4677115,4677467-4677620,
4678413-4678554,4678641-4678706,4679389-4679922
Length = 363
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 288 VDFNAGFKKFDTPFMKSSW 344
VDF G+K D FM+S W
Sbjct: 143 VDFEDGYKTMDIKFMESVW 161
>09_04_0435 -
17545879-17546605,17546721-17546782,17547123-17547335,
17547506-17547590,17547904-17548061,17548174-17548294,
17548765-17548927,17548973-17549097,17550800-17550888,
17550970-17551636,17552671-17552717,17553506-17553862
Length = 937
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 338 GLHEGCIELLEAGVEIDRGVRTLEE 264
G E C +L+ VEID + TLEE
Sbjct: 531 GSSEQCERILDLTVEIDGDINTLEE 555
>04_04_0741 + 27703869-27704186,27704278-27704337
Length = 125
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 128 DIWHISGGESLRCDVVVIVVEEIHFAGSCHLVSE 27
D W + G +L+ VVV+ +E H H S+
Sbjct: 74 DYWRLPAGATLKDVVVVVRADEAHHRDVNHFASD 107
>02_05_0422 -
28831195-28831254,28831345-28831833,28831924-28832052,
28832179-28832538
Length = 345
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 128 DIWHISGGESLRCDVVVIVVEEIHFAGSCHLVSE 27
D W + G +L+ VVV+ +E H H S+
Sbjct: 294 DYWRLPAGATLKDVVVVVRADEAHHRDVNHFASD 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,788,418
Number of Sequences: 37544
Number of extensions: 221141
Number of successful extensions: 654
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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